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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260943 through 18771 annotations produced 5 hits



RNA-binding protein 6 (Rbp6):

Annotation Number : HDC10635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260943
Gbrowse : chr3L:17212725-17215314 (-) // 100.0 //
Probeset : 1641555_at
Accessions : protein= NP_001097631; /// NP_001097632; /// NP_001137961; /// NP_730245;, nucleotide= NM_001104161; /// NM_001104162; /// NM_001144489; /// NM_168718;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0260943.
VDRC has 2 RNAi stocks for FBgn0260943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 14 of 4 2.00None
Head6 ± 11 of 4 1.00None
Eye6 ± 00 of 4 0.96None
Thoracicoabdominal ganglion14 ± 14 of 4 2.20None
Salivary gland8 ± 40 of 4 1.32None
Crop6 ± 10 of 4 1.10None
Midgut7 ± 10 of 4 1.10None
Tubule4 ± 00 of 4 0.60Down
Hindgut4 ± 10 of 4 0.80None
Heart5 ± 10 of 4 0.85None
Fat body8 ± 11 of 4 1.34None
Ovary3 ± 11 of 4 0.60None
Testis3 ± 11 of 4 0.60None
Male accessory glands4 ± 10 of 4 0.70None
Virgin spermatheca3 ± 00 of 4 0.50None
Mated spermatheca5 ± 20 of 4 0.78None
Adult carcass5 ± 10 of 4 0.90None
Larval CNS4 ± 11 of 4 0.65None
Larval Salivary gland9 ± 00 of 4 1.41None
Larval midgut9 ± 01 of 4 1.49None
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut3 ± 10 of 4 0.55None
Larval fat body6 ± 20 of 4 0.90None
Larval trachea2 ± 20 of 4 0.38None
Larval carcass9 ± 13 of 4 1.48None
S2 cells (growing)4 ± 11 of 4 0.78None
Whole fly6 ± 21 of 4



RNA-binding protein 6 (Rbp6):

Annotation Number : Stencil:3L:17078133:17066888:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260943
Gbrowse : chr3L:17111108-17122353 (-) // 100.0 //
Probeset : 1636362_at
Accessions : protein= NP_001097631; /// NP_001097632; /// NP_001137961; /// NP_730245;, nucleotide= NM_001104161; /// NM_001104162; /// NM_001144489; /// NM_168718;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0260943.
VDRC has 2 RNAi stocks for FBgn0260943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 34 of 418.10Up
Head7 ± 10 of 4 3.30None
Eye8 ± 00 of 4 3.98Up
Thoracicoabdominal ganglion24 ± 23 of 411.60Up
Salivary gland13 ± 30 of 4 6.33Up
Crop3 ± 20 of 4 1.80None
Midgut1 ± 00 of 4 0.80None
Tubule6 ± 10 of 4 2.90Up
Hindgut5 ± 20 of 4 2.50None
Heart3 ± 10 of 4 1.67None
Fat body10 ± 60 of 4 4.81None
Ovary3 ± 00 of 4 1.50None
Testis4 ± 10 of 4 1.90None
Male accessory glands5 ± 20 of 4 2.50None
Virgin spermatheca4 ± 10 of 4 2.15None
Mated spermatheca4 ± 20 of 4 2.16None
Adult carcass2 ± 00 of 4 1.40None
Larval CNS12 ± 12 of 4 5.87Up
Larval Salivary gland1 ± 00 of 4 0.72None
Larval midgut2 ± 00 of 4 0.98None
Larval tubule6 ± 30 of 4 3.30None
Larval hindgut2 ± 10 of 4 1.36None
Larval fat body3 ± 00 of 4 1.40None
Larval trachea2 ± 20 of 4 1.15None
Larval carcass3 ± 10 of 4 1.59None
S2 cells (growing)2 ± 00 of 4 0.94None
Whole fly2 ± 00 of 4



RNA-binding protein 6 (Rbp6):

Annotation Number : HDC10625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260943
Gbrowse : chr3L:17139428-17142823 (-) // 100.0 //
Probeset : 1635515_at
Accessions : protein= NP_001097631; /// NP_001097632; /// NP_001137961; /// NP_730245;, nucleotide= NM_001104161; /// NM_001104162; /// NM_001144489; /// NM_168718;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0260943.
VDRC has 2 RNAi stocks for FBgn0260943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 24 of 430.20Up
Head3 ± 10 of 4 2.70None
Eye6 ± 20 of 4 4.92None
Thoracicoabdominal ganglion16 ± 24 of 412.50Up
Salivary gland6 ± 20 of 4 4.91None
Crop6 ± 20 of 4 4.70None
Midgut7 ± 10 of 4 5.40Up
Tubule4 ± 00 of 4 3.60Up
Hindgut4 ± 10 of 4 3.00None
Heart1 ± 00 of 4 1.34None
Fat body3 ± 20 of 4 2.43None
Ovary0 ± 00 of 4 0.60None
Testis1 ± 00 of 4 1.00None
Male accessory glands7 ± 20 of 4 5.30None
Virgin spermatheca6 ± 10 of 4 4.89Up
Mated spermatheca3 ± 00 of 4 2.40None
Adult carcass5 ± 20 of 4 3.90None
Larval CNS13 ± 14 of 410.26Up
Larval Salivary gland5 ± 00 of 4 4.28Up
Larval midgut9 ± 20 of 4 7.26Up
Larval tubule4 ± 10 of 4 3.60Up
Larval hindgut4 ± 10 of 4 3.06None
Larval fat body1 ± 00 of 4 1.00None
Larval trachea2 ± 10 of 4 1.72None
Larval carcass7 ± 10 of 4 5.92Up
S2 cells (growing)1 ± 00 of 4 0.79None
Whole fly1 ± 00 of 4



RNA-binding protein 6 (Rbp6):

Annotation Number : S.C3L002201
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260943
Gbrowse : chr3L:17170107-17172796 (-) // 96.04 //
Probeset : 1623640_at
Accessions : protein= NP_001097631; /// NP_001097632; /// NP_001137961; /// NP_730245;, nucleotide= NM_001104161; /// NM_001104162; /// NM_001144489; /// NM_168718;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0260943.
VDRC has 2 RNAi stocks for FBgn0260943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 2.80Up
Head4 ± 11 of 4 1.80None
Eye4 ± 11 of 4 2.12None
Thoracicoabdominal ganglion7 ± 10 of 4 3.40Up
Salivary gland11 ± 30 of 4 4.88None
Crop2 ± 00 of 4 1.10None
Midgut0 ± 00 of 4 0.30None
Tubule2 ± 00 of 4 1.20None
Hindgut4 ± 10 of 4 1.80None
Heart4 ± 00 of 4 2.03None
Fat body5 ± 30 of 4 2.20None
Ovary1 ± 00 of 4 0.50None
Testis4 ± 00 of 4 2.00Up
Male accessory glands6 ± 20 of 4 2.80None
Virgin spermatheca2 ± 00 of 4 1.02None
Mated spermatheca2 ± 10 of 4 1.16None
Adult carcass6 ± 10 of 4 2.50None
Larval CNS1 ± 10 of 4 0.52None
Larval Salivary gland2 ± 20 of 4 1.20None
Larval midgut1 ± 00 of 4 0.48Down
Larval tubule3 ± 10 of 4 1.60None
Larval hindgut1 ± 00 of 4 0.77None
Larval fat body1 ± 00 of 4 0.50Down
Larval trachea0 ± 00 of 4 0.28Down
Larval carcass1 ± 00 of 4 0.61None
S2 cells (growing)2 ± 10 of 4 0.88None
Whole fly2 ± 00 of 4



RNA-binding protein 6 (Rbp6):

Annotation Number : CG32169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260943
Gbrowse : chr3L:17059831-17071301 (-) // 100.0 //
Probeset : 1641701_at
Accessions : protein= NP_001097631; /// NP_001097632; /// NP_001137961; /// NP_730245;, nucleotide= NM_001104161; /// NM_001104162; /// NM_001144489; /// NM_168718;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0260943.
Homophila reports that CG32169 is a close match (2e-17) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
VDRC has 2 RNAi stocks for FBgn0260943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain251 ± 204 of 417.30Up
Head58 ± 94 of 4 4.00Up
Eye107 ± 204 of 4 7.35Up
Thoracicoabdominal ganglion181 ± 334 of 412.50Up
Salivary gland6 ± 20 of 4 0.41Down
Crop6 ± 30 of 4 0.40None
Midgut3 ± 10 of 4 0.20Down
Tubule5 ± 00 of 4 0.30Down
Hindgut24 ± 10 of 4 1.70Up
Heart31 ± 34 of 4 2.19Up
Fat body5 ± 40 of 4 0.35Down
Ovary2 ± 10 of 4 0.20Down
Testis4 ± 10 of 4 0.30Down
Male accessory glands7 ± 10 of 4 0.50Down
Virgin spermatheca1 ± 00 of 4 0.12Down
Mated spermatheca2 ± 00 of 4 0.16Down
Adult carcass16 ± 50 of 4 1.20None
Larval CNS45 ± 104 of 4 3.09Up
Larval Salivary gland4 ± 10 of 4 0.30Down
Larval midgut2 ± 00 of 4 0.17Down
Larval tubule8 ± 20 of 4 0.60None
Larval hindgut1 ± 00 of 4 0.08Down
Larval fat body4 ± 10 of 4 0.30Down
Larval trachea7 ± 40 of 4 0.51Down
Larval carcass3 ± 10 of 4 0.26Down
S2 cells (growing)4 ± 10 of 4 0.30Down
Whole fly14 ± 13 of 4

Looking for FBgn0260943. 5 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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