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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260944 through 18771 annotations produced 3 hits



RNA-binding protein 1 (Rbp1):

Annotation Number : CG17136
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260944
Gbrowse : chr3R:6610103-6612194 (+) // 100.0 //
Probeset : 1627812_s_at
Accessions : protein= NP_524307; /// NP_731509; /// NP_731510; /// NP_731511;, nucleotide= NM_079583; /// NM_169363; /// NM_169364; /// NM_169365;
Pathway : via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // non-traceable author statement /// 0006376 // mRNA splice site selection // inferred from sequence o
FlyMine data for FBgn0260944.
BioGrid reports that CG17136 interacts with CG30011 CG3294 CG3506 CG5655 CG2199 CG3198 CG3845 CG4035 CG5972 CG7546 CG2848 .
VDRC has 2 RNAi stocks for FBgn0260944 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain282 ± 114 of 4 0.80Down
Head189 ± 94 of 4 0.50Down
Eye162 ± 94 of 4 0.44Down
Thoracicoabdominal ganglion259 ± 194 of 4 0.70Down
Salivary gland125 ± 44 of 4 0.34Down
Crop319 ± 204 of 4 0.90None
Midgut317 ± 104 of 4 0.90None
Tubule174 ± 44 of 4 0.50Down
Hindgut313 ± 114 of 4 0.80Down
Heart169 ± 134 of 4 0.46Down
Fat body164 ± 124 of 4 0.44Down
Ovary721 ± 74 of 4 1.90Up
Testis246 ± 144 of 4 0.70Down
Male accessory glands171 ± 94 of 4 0.50Down
Virgin spermatheca191 ± 104 of 4 0.52Down
Mated spermatheca220 ± 64 of 4 0.59Down
Adult carcass249 ± 74 of 4 0.70Down
Larval CNS618 ± 844 of 4 1.66Up
Larval Salivary gland446 ± 394 of 4 1.20None
Larval midgut207 ± 114 of 4 0.56Down
Larval tubule210 ± 134 of 4 0.60Down
Larval hindgut282 ± 54 of 4 0.76Down
Larval fat body246 ± 154 of 4 0.70Down
Larval trachea533 ± 704 of 4 1.44Up
Larval carcass271 ± 184 of 4 0.73Down
S2 cells (growing)406 ± 214 of 4 1.09None
Whole fly371 ± 184 of 4



RNA-binding protein 1 (Rbp1):

Annotation Number : CG17136
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260944
Gbrowse : chr3R:6610103-6610820 (+) // 100.0 //
Probeset : 1639855_at
Accessions : protein= NP_524307; /// NP_731509; /// NP_731510; /// NP_731511;, nucleotide= NM_079583; /// NM_169363; /// NM_169364; /// NM_169365;
Pathway : via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // non-traceable author statement /// 0006376 // mRNA splice site selection // inferred from sequence o
FlyMine data for FBgn0260944.
BioGrid reports that CG17136 interacts with CG30011 CG3294 CG3506 CG5655 CG2199 CG3198 CG3845 CG4035 CG5972 CG7546 CG2848 .
VDRC has 2 RNAi stocks for FBgn0260944 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 ± 14 of 4 4.20Up
Head5 ± 10 of 4 0.60None
Eye3 ± 00 of 4 0.37Down
Thoracicoabdominal ganglion16 ± 44 of 4 1.90None
Salivary gland7 ± 50 of 4 0.90None
Crop6 ± 20 of 4 0.70None
Midgut5 ± 20 of 4 0.70None
Tubule2 ± 00 of 4 0.30Down
Hindgut4 ± 20 of 4 0.50None
Heart1 ± 00 of 4 0.17Down
Fat body3 ± 20 of 4 0.44Down
Ovary2 ± 10 of 4 0.30Down
Testis2 ± 10 of 4 0.30Down
Male accessory glands3 ± 10 of 4 0.40Down
Virgin spermatheca0 ± 00 of 4 0.10Down
Mated spermatheca1 ± 00 of 4 0.13Down
Adult carcass3 ± 00 of 4 0.50Down
Larval CNS10 ± 23 of 4 1.20None
Larval Salivary gland7 ± 20 of 4 0.92None
Larval midgut3 ± 10 of 4 0.38Down
Larval tubule9 ± 21 of 4 1.20None
Larval hindgut1 ± 00 of 4 0.14Down
Larval fat body12 ± 20 of 4 1.50None
Larval trachea4 ± 20 of 4 0.50None
Larval carcass2 ± 00 of 4 0.26Down
S2 cells (growing)10 ± 13 of 4 1.29None
Whole fly8 ± 10 of 4



RNA-binding protein 1 (Rbp1):

Annotation Number : CG17136
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260944
Gbrowse : chr3R:6610120-6612194 (+) // 100.0 //
Probeset : 1638486_at
Accessions : protein= NP_524307; /// NP_731509; /// NP_731510; /// NP_731511;, nucleotide= NM_079583; /// NM_169363; /// NM_169364; /// NM_169365;
Pathway : via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // non-traceable author statement /// 0006376 // mRNA splice site selection // inferred from sequence o
FlyMine data for FBgn0260944.
BioGrid reports that CG17136 interacts with CG30011 CG3294 CG3506 CG5655 CG2199 CG3198 CG3845 CG4035 CG5972 CG7546 CG2848 .
VDRC has 2 RNAi stocks for FBgn0260944 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain343 ± 254 of 411.70Up
Head57 ± 24 of 4 2.00Up
Eye67 ± 64 of 4 2.31Up
Thoracicoabdominal ganglion276 ± 234 of 4 9.40Up
Salivary gland195 ± 204 of 4 6.63Up
Crop58 ± 14 of 4 2.00Up
Midgut63 ± 14 of 4 2.20Up
Tubule35 ± 04 of 4 1.20Up
Hindgut70 ± 44 of 4 2.40Up
Heart19 ± 24 of 4 0.66Down
Fat body52 ± 64 of 4 1.77Up
Ovary24 ± 14 of 4 0.80None
Testis8 ± 04 of 4 0.30Down
Male accessory glands232 ± 114 of 4 7.90Up
Virgin spermatheca59 ± 34 of 4 2.01Up
Mated spermatheca47 ± 54 of 4 1.62Up
Adult carcass37 ± 54 of 4 1.30None
Larval CNS160 ± 204 of 4 5.45Up
Larval Salivary gland105 ± 94 of 4 3.60Up
Larval midgut36 ± 24 of 4 1.22None
Larval tubule45 ± 24 of 4 1.60Up
Larval hindgut40 ± 34 of 4 1.36Up
Larval fat body93 ± 44 of 4 3.20Up
Larval trachea54 ± 124 of 4 1.84Up
Larval carcass29 ± 14 of 4 1.00None
S2 cells (growing)150 ± 54 of 4 5.11Up
Whole fly29 ± 34 of 4

Looking for FBgn0260944. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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