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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260964 through 18771 annotations produced 4 hits



Vesicular monoamine transporter (Vmat):

Annotation Number : CG6119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260964
Gbrowse : chr2R:9405555-9407737 (-) // 100.0 //
Probeset : 1636275_a_at
Accessions : protein= NP_001014524; /// NP_001014525; /// NP_001014526;, nucleotide= NM_001014524; /// NM_001014525; /// NM_001014526;
Pathway : 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0016021 // integral to membrane // in
Interpro : 0005430 // synaptic vesicle amine transmembrane transporter activity // inferred from direct assay /// 0008504 // monoam
FlyMine data for FBgn0260964.
TRiP has 2 RNAi stocks for FBgn0260964 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain578 134 of 420.50Up
Head150 124 of 4 5.30Up
Eye142 74 of 4 5.05Up
Thoracicoabdominal ganglion757 384 of 426.80Up
Salivary gland79 54 of 4 2.80Up
Crop154 54 of 4 5.50Up
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.00Down
Hindgut3 00 of 4 0.10Down
Heart10 23 of 4 0.36Down
Fat body16 70 of 4 0.57Down
Ovary6 00 of 4 0.20Down
Testis3 10 of 4 0.10Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca8 10 of 4 0.31Down
Mated spermatheca5 00 of 4 0.19Down
Adult carcass76 84 of 4 2.70Up
Larval CNS271 454 of 4 9.64Up
Larval Salivary gland1 00 of 4 0.07Down
Larval midgut2 00 of 4 0.07Down
Larval tubule1 10 of 4 0.10Down
Larval hindgut33 74 of 4 1.18None
Larval fat body1 00 of 4 0.00Down
Larval trachea4 40 of 4 0.17Down
Larval carcass6 10 of 4 0.22Down
S2 cells (growing)37 14 of 4 1.33Up
Whole fly28 24 of 4



Vesicular monoamine transporter (Vmat):

Annotation Number : CG6139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260964
Gbrowse : chr2R:9414877-9420494 (-) // 100.0 //
Probeset : 1632856_s_at
Accessions : protein= NP_001014524; /// NP_001014525; /// NP_001014526;, nucleotide= NM_001014524; /// NM_001014525; /// NM_001014526;
Pathway : 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0016021 // integral to membrane // in
Interpro : 0005430 // synaptic vesicle amine transmembrane transporter activity // inferred from direct assay /// 0008504 // monoam
FlyMine data for FBgn0260964.
TRiP has 2 RNAi stocks for FBgn0260964 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 44 of 4 7.20Up
Head5 10 of 4 1.40None
Eye9 02 of 4 2.56Up
Thoracicoabdominal ganglion17 12 of 4 4.50Up
Salivary gland15 30 of 4 4.00Up
Crop28 33 of 4 7.50Up
Midgut4 00 of 4 1.20None
Tubule3 00 of 4 0.80None
Hindgut6 00 of 4 1.60None
Heart6 00 of 4 1.71None
Fat body7 20 of 4 1.95None
Ovary4 10 of 4 1.10None
Testis0 00 of 4 0.20None
Male accessory glands4 10 of 4 1.20None
Virgin spermatheca4 10 of 4 1.13None
Mated spermatheca6 10 of 4 1.77None
Adult carcass16 10 of 4 4.20Up
Larval CNS7 10 of 4 2.08None
Larval Salivary gland3 00 of 4 0.98None
Larval midgut4 20 of 4 1.14None
Larval tubule2 00 of 4 0.70None
Larval hindgut7 10 of 4 1.87None
Larval fat body4 10 of 4 1.10None
Larval trachea5 10 of 4 1.44None
Larval carcass2 00 of 4 0.75None
S2 cells (growing)3 00 of 4 0.84None
Whole fly3 10 of 4



Vesicular monoamine transporter (Vmat):

Annotation Number : CG6119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260964
Gbrowse : chr2R:9405743-9407737 (-) // 100.0 //
Probeset : 1628739_at
Accessions : protein= NP_001014524; /// NP_001014525; /// NP_001014526;, nucleotide= NM_001014524; /// NM_001014525; /// NM_001014526;
Pathway : 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0016021 // integral to membrane // in
Interpro : 0005430 // synaptic vesicle amine transmembrane transporter activity // inferred from direct assay /// 0008504 // monoam
FlyMine data for FBgn0260964.
TRiP has 2 RNAi stocks for FBgn0260964 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 24 of 4 2.10Up
Head186 114 of 4 2.40Up
Eye360 134 of 4 4.64Up
Thoracicoabdominal ganglion92 24 of 4 1.20None
Salivary gland250 164 of 4 3.22Up
Crop279 234 of 4 3.60Up
Midgut6 10 of 4 0.10Down
Tubule6 10 of 4 0.10Down
Hindgut23 12 of 4 0.30Down
Heart37 64 of 4 0.48Down
Fat body33 163 of 4 0.43Down
Ovary43 14 of 4 0.60Down
Testis6 10 of 4 0.10Down
Male accessory glands7 20 of 4 0.10Down
Virgin spermatheca19 12 of 4 0.25Down
Mated spermatheca23 81 of 4 0.31Down
Adult carcass176 94 of 4 2.30Up
Larval CNS37 94 of 4 0.48Down
Larval Salivary gland4 10 of 4 0.06Down
Larval midgut20 10 of 4 0.27Down
Larval tubule5 10 of 4 0.10Down
Larval hindgut135 244 of 4 1.74None
Larval fat body6 20 of 4 0.10Down
Larval trachea11 112 of 4 0.15Down
Larval carcass12 20 of 4 0.16Down
S2 cells (growing)74 34 of 4 0.95None
Whole fly77 74 of 4



Vesicular monoamine transporter (Vmat):

Annotation Number : CG6119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260964
Gbrowse : chr2R:9405555-9407737 (-) // 100.0 //
Probeset : 1637393_at
Accessions : protein= NP_001014524; /// NP_001014525; /// NP_001014526;, nucleotide= NM_001014524; /// NM_001014525; /// NM_001014526;
Pathway : 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0016021 // integral to membrane // in
Interpro : 0005430 // synaptic vesicle amine transmembrane transporter activity // inferred from direct assay /// 0008504 // monoam
FlyMine data for FBgn0260964.
TRiP has 2 RNAi stocks for FBgn0260964 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain963 384 of 442.10Up
Head206 274 of 4 9.00Up
Eye61 114 of 4 2.67Up
Thoracicoabdominal ganglion1309 1144 of 457.20Up
Salivary gland3 00 of 4 0.14None
Crop111 54 of 4 4.90Up
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.10Down
Hindgut4 00 of 4 0.20None
Heart1 10 of 4 0.09None
Fat body7 30 of 4 0.32None
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.10None
Male accessory glands5 00 of 4 0.20None
Virgin spermatheca7 21 of 4 0.34None
Mated spermatheca15 53 of 4 0.66None
Adult carcass16 43 of 4 0.70None
Larval CNS512 854 of 422.38Up
Larval Salivary gland0 00 of 4 0.02None
Larval midgut0 00 of 4 0.03None
Larval tubule0 00 of 4 0.00None
Larval hindgut5 10 of 4 0.24None
Larval fat body3 20 of 4 0.20None
Larval trachea0 00 of 4 0.03None
Larval carcass1 00 of 4 0.05None
S2 cells (growing)0 00 of 4 0.02None
Whole fly22 74 of 4

Looking for FBgn0260964. 4 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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