FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260964 through 18771 annotations produced 4 hits

Vesicular monoamine transporter (Vmat):

Annotation Number : CG6139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260964
Gbrowse : chr2R:9414877-9420494 (-) // 100.0 //
Probeset : 1632856_s_at
Accessions : protein= NP_001014524; /// NP_001014525; /// NP_001014526;, nucleotide= NM_001014524; /// NM_001014525; /// NM_001014526;
Pathway : 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0016021 // integral to membrane // in
Interpro : 0005430 // synaptic vesicle amine transmembrane transporter activity // inferred from direct assay /// 0008504 // monoam
FlyMine data for FBgn0260964.
TRiP has 2 RNAi stocks for FBgn0260964 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260964 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	27 ± 4	4 of 4	7.20	Up
Head	5 ± 1	0 of 4	1.40	None
Eye	9 ± 0	2 of 4	2.56	Up
Thoracicoabdominal ganglion	17 ± 1	2 of 4	4.50	Up
Salivary gland	15 ± 3	0 of 4	4.00	Up
Crop	28 ± 3	3 of 4	7.50	Up
Midgut	4 ± 0	0 of 4	1.20	None
Tubule	3 ± 0	0 of 4	0.80	None
Hindgut	6 ± 0	0 of 4	1.60	None
Heart	6 ± 0	0 of 4	1.71	None
Fat body	7 ± 2	0 of 4	1.95	None
Ovary	4 ± 1	0 of 4	1.10	None
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	4 ± 1	0 of 4	1.20	None
Virgin spermatheca	4 ± 1	0 of 4	1.13	None
Mated spermatheca	6 ± 1	0 of 4	1.77	None
Adult carcass	16 ± 1	0 of 4	4.20	Up
Larval CNS	7 ± 1	0 of 4	2.08	None
Larval Salivary gland	3 ± 0	0 of 4	0.98	None
Larval midgut	4 ± 2	0 of 4	1.14	None
Larval tubule	2 ± 0	0 of 4	0.70	None
Larval hindgut	7 ± 1	0 of 4	1.87	None
Larval fat body	4 ± 1	0 of 4	1.10	None
Larval trachea	5 ± 1	0 of 4	1.44	None
Larval carcass	2 ± 0	0 of 4	0.75	None
S2 cells (growing)	3 ± 0	0 of 4	0.84	None
Whole fly	3 ± 1	0 of 4

Vesicular monoamine transporter (Vmat):

Annotation Number : CG6119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260964
Gbrowse : chr2R:9405743-9407737 (-) // 100.0 //
Probeset : 1628739_at
Accessions : protein= NP_001014524; /// NP_001014525; /// NP_001014526;, nucleotide= NM_001014524; /// NM_001014525; /// NM_001014526;
Pathway : 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0016021 // integral to membrane // in
Interpro : 0005430 // synaptic vesicle amine transmembrane transporter activity // inferred from direct assay /// 0008504 // monoam
FlyMine data for FBgn0260964.
TRiP has 2 RNAi stocks for FBgn0260964 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260964 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	166 ± 2	4 of 4	2.10	Up
Head	186 ± 11	4 of 4	2.40	Up
Eye	360 ± 13	4 of 4	4.64	Up
Thoracicoabdominal ganglion	92 ± 2	4 of 4	1.20	None
Salivary gland	250 ± 16	4 of 4	3.22	Up
Crop	279 ± 23	4 of 4	3.60	Up
Midgut	6 ± 1	0 of 4	0.10	Down
Tubule	6 ± 1	0 of 4	0.10	Down
Hindgut	23 ± 1	2 of 4	0.30	Down
Heart	37 ± 6	4 of 4	0.48	Down
Fat body	33 ± 16	3 of 4	0.43	Down
Ovary	43 ± 1	4 of 4	0.60	Down
Testis	6 ± 1	0 of 4	0.10	Down
Male accessory glands	7 ± 2	0 of 4	0.10	Down
Virgin spermatheca	19 ± 1	2 of 4	0.25	Down
Mated spermatheca	23 ± 8	1 of 4	0.31	Down
Adult carcass	176 ± 9	4 of 4	2.30	Up
Larval CNS	37 ± 9	4 of 4	0.48	Down
Larval Salivary gland	4 ± 1	0 of 4	0.06	Down
Larval midgut	20 ± 1	0 of 4	0.27	Down
Larval tubule	5 ± 1	0 of 4	0.10	Down
Larval hindgut	135 ± 24	4 of 4	1.74	None
Larval fat body	6 ± 2	0 of 4	0.10	Down
Larval trachea	11 ± 11	2 of 4	0.15	Down
Larval carcass	12 ± 2	0 of 4	0.16	Down
S2 cells (growing)	74 ± 3	4 of 4	0.95	None
Whole fly	77 ± 7	4 of 4

Vesicular monoamine transporter (Vmat):

Annotation Number : CG6119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260964
Gbrowse : chr2R:9405555-9407737 (-) // 100.0 //
Probeset : 1637393_at
Accessions : protein= NP_001014524; /// NP_001014525; /// NP_001014526;, nucleotide= NM_001014524; /// NM_001014525; /// NM_001014526;
Pathway : 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0016021 // integral to membrane // in
Interpro : 0005430 // synaptic vesicle amine transmembrane transporter activity // inferred from direct assay /// 0008504 // monoam
FlyMine data for FBgn0260964.
TRiP has 2 RNAi stocks for FBgn0260964 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260964 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	963 ± 38	4 of 4	42.10	Up
Head	206 ± 27	4 of 4	9.00	Up
Eye	61 ± 11	4 of 4	2.67	Up
Thoracicoabdominal ganglion	1309 ± 114	4 of 4	57.20	Up
Salivary gland	3 ± 0	0 of 4	0.14	None
Crop	111 ± 5	4 of 4	4.90	Up
Midgut	0 ± 0	0 of 4	0.00	Down
Tubule	2 ± 0	0 of 4	0.10	Down
Hindgut	4 ± 0	0 of 4	0.20	None
Heart	1 ± 1	0 of 4	0.09	None
Fat body	7 ± 3	0 of 4	0.32	None
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	1 ± 0	0 of 4	0.10	None
Male accessory glands	5 ± 0	0 of 4	0.20	None
Virgin spermatheca	7 ± 2	1 of 4	0.34	None
Mated spermatheca	15 ± 5	3 of 4	0.66	None
Adult carcass	16 ± 4	3 of 4	0.70	None
Larval CNS	512 ± 85	4 of 4	22.38	Up
Larval Salivary gland	0 ± 0	0 of 4	0.02	None
Larval midgut	0 ± 0	0 of 4	0.03	None
Larval tubule	0 ± 0	0 of 4	0.00	None
Larval hindgut	5 ± 1	0 of 4	0.24	None
Larval fat body	3 ± 2	0 of 4	0.20	None
Larval trachea	0 ± 0	0 of 4	0.03	None
Larval carcass	1 ± 0	0 of 4	0.05	None
S2 cells (growing)	0 ± 0	0 of 4	0.02	None
Whole fly	22 ± 7	4 of 4

Vesicular monoamine transporter (Vmat):

Annotation Number : CG6119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260964
Gbrowse : chr2R:9405555-9407737 (-) // 100.0 //
Probeset : 1636275_a_at
Accessions : protein= NP_001014524; /// NP_001014525; /// NP_001014526;, nucleotide= NM_001014524; /// NM_001014525; /// NM_001014526;
Pathway : 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0016021 // integral to membrane // in
Interpro : 0005430 // synaptic vesicle amine transmembrane transporter activity // inferred from direct assay /// 0008504 // monoam
FlyMine data for FBgn0260964.
TRiP has 2 RNAi stocks for FBgn0260964 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260964 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	578 ± 13	4 of 4	20.50	Up
Head	150 ± 12	4 of 4	5.30	Up
Eye	142 ± 7	4 of 4	5.05	Up
Thoracicoabdominal ganglion	757 ± 38	4 of 4	26.80	Up
Salivary gland	79 ± 5	4 of 4	2.80	Up
Crop	154 ± 5	4 of 4	5.50	Up
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	1 ± 0	0 of 4	0.00	Down
Hindgut	3 ± 0	0 of 4	0.10	Down
Heart	10 ± 2	3 of 4	0.36	Down
Fat body	16 ± 7	0 of 4	0.57	Down
Ovary	6 ± 0	0 of 4	0.20	Down
Testis	3 ± 1	0 of 4	0.10	Down
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	8 ± 1	0 of 4	0.31	Down
Mated spermatheca	5 ± 0	0 of 4	0.19	Down
Adult carcass	76 ± 8	4 of 4	2.70	Up
Larval CNS	271 ± 45	4 of 4	9.64	Up
Larval Salivary gland	1 ± 0	0 of 4	0.07	Down
Larval midgut	2 ± 0	0 of 4	0.07	Down
Larval tubule	1 ± 1	0 of 4	0.10	Down
Larval hindgut	33 ± 7	4 of 4	1.18	None
Larval fat body	1 ± 0	0 of 4	0.00	Down
Larval trachea	4 ± 4	0 of 4	0.17	Down
Larval carcass	6 ± 1	0 of 4	0.22	Down
S2 cells (growing)	37 ± 1	4 of 4	1.33	Up
Whole fly	28 ± 2	4 of 4

Looking for FBgn0260964. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720