FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260968 through 18771 annotations produced 1 hits

(CG42591):

Annotation Number : S.C3L001030
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260968
Gbrowse : chr3L:8061524-8063038 (-) // 100.0 //
Probeset : 1635650_at
Accessions : protein= NP_001163377;, nucleotide= NM_001169906;
FlyMine data for FBgn0260968.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.30	Down
Head	3 ± 1	0 of 4	0.20	Down
Eye	0 ± 0	0 of 4	0.02	Down
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.20	Down
Salivary gland	8 ± 2	0 of 4	0.63	None
Crop	4 ± 1	0 of 4	0.30	Down
Midgut	2 ± 1	0 of 4	0.20	Down
Tubule	7 ± 0	0 of 4	0.50	Down
Hindgut	2 ± 0	0 of 4	0.20	Down
Heart	3 ± 0	0 of 4	0.24	Down
Fat body	9 ± 3	0 of 4	0.70	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	120 ± 6	4 of 4	8.90	Up
Male accessory glands	14 ± 2	0 of 4	1.10	None
Virgin spermatheca	10 ± 0	0 of 4	0.75	None
Mated spermatheca	8 ± 0	1 of 4	0.59	None
Adult carcass	5 ± 1	0 of 4	0.40	Down
Larval CNS	3 ± 0	0 of 4	0.23	Down
Larval Salivary gland	5 ± 1	0 of 4	0.39	Down
Larval midgut	4 ± 1	0 of 4	0.35	Down
Larval tubule	6 ± 1	1 of 4	0.50	Down
Larval hindgut	1 ± 0	0 of 4	0.11	Down
Larval fat body	34 ± 18	3 of 4	2.50	None
Larval trachea	3 ± 1	1 of 4	0.26	Down
Larval carcass	2 ± 1	0 of 4	0.16	Down
S2 cells (growing)	0 ± 0	0 of 4	0.02	Down
Whole fly	13 ± 2	4 of 4

Looking for FBgn0260968. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720