FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260970 through 18771 annotations produced 3 hits

CG1531 (CG42593):

Annotation Number : CG1531
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260970
Gbrowse : chrX:7841513-7846100 (+) // 100.0 //
Probeset : 1636316_a_at
Accessions : protein= NP_572428;, nucleotide= NM_132200;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0260970.
Homophila reports that CG1531 is a close match (3e-19) to human gene JBS;UBR1 (NP_777576), a gene associated with Johanson-Blizzard syndrome, 243800 (3).
VDRC has 5 RNAi stocks for FBgn0260970 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	61 ± 1	4 of 4	1.40	None
Head	34 ± 5	4 of 4	0.80	None
Eye	15 ± 3	4 of 4	0.35	Down
Thoracicoabdominal ganglion	47 ± 4	4 of 4	1.10	None
Salivary gland	37 ± 7	4 of 4	0.84	None
Crop	29 ± 3	4 of 4	0.70	None
Midgut	23 ± 2	4 of 4	0.50	Down
Tubule	16 ± 2	3 of 4	0.40	Down
Hindgut	22 ± 1	4 of 4	0.50	Down
Heart	11 ± 0	4 of 4	0.26	Down
Fat body	46 ± 8	4 of 4	1.06	None
Ovary	73 ± 6	4 of 4	1.70	Up
Testis	49 ± 5	4 of 4	1.10	None
Male accessory glands	16 ± 2	2 of 4	0.40	Down
Virgin spermatheca	4 ± 0	0 of 4	0.10	Down
Mated spermatheca	8 ± 1	0 of 4	0.19	Down
Adult carcass	34 ± 2	4 of 4	0.80	None
Larval CNS	51 ± 11	4 of 4	1.18	None
Larval Salivary gland	30 ± 3	4 of 4	0.69	None
Larval midgut	20 ± 2	4 of 4	0.45	Down
Larval tubule	41 ± 3	4 of 4	0.90	None
Larval hindgut	30 ± 2	4 of 4	0.68	None
Larval fat body	53 ± 4	4 of 4	1.20	None
Larval trachea	13 ± 1	4 of 4	0.32	Down
Larval carcass	35 ± 4	4 of 4	0.80	None
S2 cells (growing)	76 ± 2	4 of 4	1.73	Up
Whole fly	44 ± 6	4 of 4

CG1531 (CG42593):

Annotation Number : CG1531
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260970
Gbrowse : chrX:7841513-7846278 (+) // 100.0 //
Probeset : 1629634_at
Accessions : protein= NP_572428;, nucleotide= NM_132200;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0260970.
Homophila reports that CG1531 is a close match (3e-19) to human gene JBS;UBR1 (NP_777576), a gene associated with Johanson-Blizzard syndrome, 243800 (3).
VDRC has 5 RNAi stocks for FBgn0260970 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	122 ± 1	4 of 4	2.20	Up
Head	51 ± 4	4 of 4	0.90	None
Eye	28 ± 5	4 of 4	0.52	None
Thoracicoabdominal ganglion	86 ± 4	4 of 4	1.60	Up
Salivary gland	52 ± 8	4 of 4	0.96	None
Crop	32 ± 3	4 of 4	0.60	None
Midgut	34 ± 3	4 of 4	0.60	None
Tubule	29 ± 2	4 of 4	0.50	Down
Hindgut	36 ± 2	4 of 4	0.70	None
Heart	30 ± 3	4 of 4	0.55	None
Fat body	75 ± 4	4 of 4	1.36	None
Ovary	118 ± 1	4 of 4	2.10	Up
Testis	75 ± 5	4 of 4	1.40	None
Male accessory glands	27 ± 3	4 of 4	0.50	None
Virgin spermatheca	10 ± 0	2 of 4	0.18	Down
Mated spermatheca	11 ± 3	1 of 4	0.21	Down
Adult carcass	51 ± 8	4 of 4	0.90	None
Larval CNS	92 ± 19	4 of 4	1.67	Up
Larval Salivary gland	51 ± 3	4 of 4	0.94	None
Larval midgut	32 ± 4	4 of 4	0.58	None
Larval tubule	60 ± 5	4 of 4	1.10	None
Larval hindgut	49 ± 4	4 of 4	0.89	None
Larval fat body	70 ± 2	4 of 4	1.30	None
Larval trachea	30 ± 9	4 of 4	0.56	None
Larval carcass	57 ± 6	4 of 4	1.04	None
S2 cells (growing)	98 ± 3	4 of 4	1.79	Up
Whole fly	55 ± 9	4 of 4

CG1531 (CG42593):

Annotation Number : CG1530
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260970
Gbrowse : chrX:7831001-7835684 (+) // 100.0 //
Probeset : 1624967_at
Accessions : protein= NP_572428;, nucleotide= NM_132200;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0260970.
Homophila reports that CG1530 is a close match (2e-14) to human gene JBS;UBR1 (NP_777576), a gene associated with Johanson-Blizzard syndrome, 243800 (3).
VDRC has 5 RNAi stocks for FBgn0260970 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	0 of 4	0.90	None
Head	4 ± 2	0 of 4	0.80	None
Eye	2 ± 1	0 of 4	0.47	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.80	None
Salivary gland	7 ± 3	0 of 4	1.30	None
Crop	3 ± 1	0 of 4	0.70	None
Midgut	5 ± 1	0 of 4	0.90	None
Tubule	2 ± 0	0 of 4	0.50	Down
Hindgut	2 ± 1	0 of 4	0.50	None
Heart	3 ± 0	0 of 4	0.57	None
Fat body	4 ± 3	0 of 4	0.90	None
Ovary	7 ± 1	2 of 4	1.30	None
Testis	4 ± 0	0 of 4	0.90	None
Male accessory glands	4 ± 3	0 of 4	0.80	None
Virgin spermatheca	1 ± 0	0 of 4	0.33	None
Mated spermatheca	1 ± 0	0 of 4	0.23	None
Adult carcass	4 ± 1	0 of 4	0.90	None
Larval CNS	4 ± 3	0 of 4	0.75	None
Larval Salivary gland	3 ± 1	0 of 4	0.63	None
Larval midgut	3 ± 1	0 of 4	0.70	None
Larval tubule	7 ± 1	0 of 4	1.40	None
Larval hindgut	3 ± 1	0 of 4	0.61	None
Larval fat body	15 ± 2	1 of 4	2.90	Up
Larval trachea	3 ± 1	0 of 4	0.60	None
Larval carcass	3 ± 1	0 of 4	0.68	None
S2 cells (growing)	21 ± 1	4 of 4	3.93	Up
Whole fly	5 ± 1	0 of 4

Looking for FBgn0260970. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720