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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260972 through 18771 annotations produced 1 hits



beta homologue (alc):

Annotation Number : CG8057
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260972
Gbrowse : chr2R:5022138-5025455 (-) // 100.0 //
Probeset : 1629927_at
Accessions : protein= NP_610460;, nucleotide= NM_136616;
Interpro : 0004679 // AMP-activated protein kinase activity // inferred from sequence or structural similarity /// 0016740 // trans
FlyMine data for FBgn0260972.
TRiP has 3 RNAi stocks for FBgn0260972 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260972 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.70None
Head2 10 of 4 0.30None
Eye15 14 of 4 2.31Up
Thoracicoabdominal ganglion10 10 of 4 1.60None
Salivary gland2 00 of 4 0.32Down
Crop1 00 of 4 0.20Down
Midgut5 20 of 4 0.80None
Tubule8 00 of 4 1.30Up
Hindgut2 00 of 4 0.30Down
Heart12 32 of 4 1.80None
Fat body12 11 of 4 1.80Up
Ovary0 00 of 4 0.10Down
Testis9 13 of 4 1.50None
Male accessory glands4 10 of 4 0.60None
Virgin spermatheca2 10 of 4 0.39Down
Mated spermatheca4 20 of 4 0.70None
Adult carcass5 21 of 4 0.80None
Larval CNS0 00 of 4 0.10Down
Larval Salivary gland2 20 of 4 0.39None
Larval midgut9 00 of 4 1.35None
Larval tubule3 20 of 4 0.50None
Larval hindgut4 10 of 4 0.60None
Larval fat body4 20 of 4 0.70None
Larval trachea2 20 of 4 0.38Down
Larval carcass0 00 of 4 0.12Down
S2 cells (growing)2 10 of 4 0.42Down
Whole fly6 00 of 4

Looking for FBgn0260972. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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