FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260985 through 18771 annotations produced 1 hits

Replication factor C subunit 4 (RfC4):

Annotation Number : CG14999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260985
Gbrowse : chr3L:4134852-4136039 (-) // 100.0 //
Probeset : 1634943_at
Accessions : protein= NP_523915;, nucleotide= NM_079191;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author
FlyMine data for FBgn0260985.
BioGrid reports that CG14999 interacts with CG5313 CG8092 CG33122 .
VDRC has 3 RNAi stocks for FBgn0260985 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	75 ± 2	4 of 4	0.30	Down
Head	48 ± 3	4 of 4	0.20	Down
Eye	57 ± 1	4 of 4	0.19	Down
Thoracicoabdominal ganglion	85 ± 3	4 of 4	0.30	Down
Salivary gland	36 ± 3	4 of 4	0.12	Down
Crop	48 ± 2	4 of 4	0.20	Down
Midgut	28 ± 2	4 of 4	0.10	Down
Tubule	43 ± 3	4 of 4	0.10	Down
Hindgut	50 ± 1	4 of 4	0.20	Down
Heart	37 ± 1	4 of 4	0.13	Down
Fat body	31 ± 5	4 of 4	0.11	Down
Ovary	628 ± 17	4 of 4	2.10	Up
Testis	52 ± 3	4 of 4	0.20	Down
Male accessory glands	106 ± 9	4 of 4	0.40	Down
Virgin spermatheca	24 ± 0	4 of 4	0.08	Down
Mated spermatheca	39 ± 1	4 of 4	0.13	Down
Adult carcass	37 ± 4	4 of 4	0.10	Down
Larval CNS	441 ± 23	4 of 4	1.48	Up
Larval Salivary gland	89 ± 9	4 of 4	0.30	Down
Larval midgut	21 ± 4	4 of 4	0.07	Down
Larval tubule	31 ± 1	4 of 4	0.10	Down
Larval hindgut	74 ± 3	4 of 4	0.25	Down
Larval fat body	34 ± 2	4 of 4	0.10	Down
Larval trachea	259 ± 25	4 of 4	0.87	None
Larval carcass	75 ± 10	4 of 4	0.25	Down
S2 cells (growing)	514 ± 13	4 of 4	1.73	Up
Whole fly	297 ± 12	4 of 4

Looking for FBgn0260985. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720