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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260986 through 18771 annotations produced 1 hits



mei-38 (mei-38):

Annotation Number : CG14781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260986
Gbrowse : chrX:1371126-1372515 (+) // 100.0 //
Probeset : 1640362_at
Accessions : protein= NP_569922;, nucleotide= NM_130566;
Pathway : 0005819 // spindle // inferred from direct assay /// 0005827 // polar microtubule // inferred from direct assay /// 0005
FlyMine data for FBgn0260986.
VDRC has 2 RNAi stocks for FBgn0260986 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye2 10 of 4 0.03Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland9 50 of 4 0.12Down
Crop0 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart3 10 of 4 0.04Down
Fat body1 00 of 4 0.02Down
Ovary188 84 of 4 2.20Up
Testis10 21 of 4 0.10Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass4 10 of 4 0.00Down
Larval CNS81 14 of 4 0.95None
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut1 00 of 4 0.02Down
Larval tubule8 10 of 4 0.10Down
Larval hindgut2 10 of 4 0.03Down
Larval fat body4 10 of 4 0.00Down
Larval trachea23 54 of 4 0.28Down
Larval carcass3 10 of 4 0.04Down
S2 cells (growing)54 24 of 4 0.64Down
Whole fly86 34 of 4

Looking for FBgn0260986. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime