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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260987 through 18771 annotations produced 1 hits



lethal 3 (vtd):

Annotation Number : CG17436
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260987
Gbrowse : chr3LHet:2243570-2265364 (+) // 100.0 //
Probeset : 1630884_at
Accessions : protein= NP_001015132;, nucleotide= NM_001015132;
Pathway : "0000228 // nuclear chromosome // inferred from electronic annotation /// 0000775 // chromosome
Interpro : centromeric region // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005705 /
FlyMine data for FBgn0260987.
TRiP has 1 RNAi stocks for FBgn0260987 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260987 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain465 144 of 4 1.20Up
Head390 164 of 4 1.00None
Eye379 184 of 4 0.98None
Thoracicoabdominal ganglion455 154 of 4 1.20None
Salivary gland483 194 of 4 1.25Up
Crop408 54 of 4 1.10None
Midgut229 64 of 4 0.60Down
Tubule429 114 of 4 1.10Up
Hindgut358 74 of 4 0.90None
Heart219 64 of 4 0.57Down
Fat body221 64 of 4 0.57Down
Ovary701 104 of 4 1.80Up
Testis165 54 of 4 0.40Down
Male accessory glands306 104 of 4 0.80Down
Virgin spermatheca280 134 of 4 0.72Down
Mated spermatheca330 304 of 4 0.86None
Adult carcass228 34 of 4 0.60Down
Larval CNS695 304 of 4 1.80Up
Larval Salivary gland560 124 of 4 1.45Up
Larval midgut227 84 of 4 0.59Down
Larval tubule418 54 of 4 1.10None
Larval hindgut349 154 of 4 0.90None
Larval fat body258 154 of 4 0.70Down
Larval trachea251 134 of 4 0.65Down
Larval carcass326 184 of 4 0.85None
S2 cells (growing)398 14 of 4 1.03None
Whole fly386 244 of 4

Looking for FBgn0260987. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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