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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261004 through 18771 annotations produced 1 hits



star dust (asl):

Annotation Number : CG2919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261004
Gbrowse : chr3R:1428948-1432244 (-) // 100.0 //
Probeset : 1625999_at
Accessions : protein= NP_649557;, nucleotide= NM_141300;
Pathway : 0000242 // pericentriolar material // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay
FlyMine data for FBgn0261004.
TRiP has 2 RNAi stocks for FBgn0261004 available for purchase.
VDRC has 1 RNAi stocks for FBgn0261004 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 14 of 4 0.40Down
Head23 ± 13 of 4 0.20Down
Eye14 ± 13 of 4 0.15Down
Thoracicoabdominal ganglion23 ± 24 of 4 0.20Down
Salivary gland23 ± 01 of 4 0.24Down
Crop44 ± 24 of 4 0.50Down
Midgut27 ± 13 of 4 0.30Down
Tubule19 ± 02 of 4 0.20Down
Hindgut27 ± 34 of 4 0.30Down
Heart47 ± 24 of 4 0.49Down
Fat body24 ± 24 of 4 0.25Down
Ovary205 ± 54 of 4 2.10Up
Testis199 ± 34 of 4 2.10Up
Male accessory glands24 ± 24 of 4 0.30Down
Virgin spermatheca16 ± 13 of 4 0.17Down
Mated spermatheca13 ± 11 of 4 0.13Down
Adult carcass24 ± 43 of 4 0.30Down
Larval CNS150 ± 94 of 4 1.55Up
Larval Salivary gland71 ± 84 of 4 0.74Down
Larval midgut31 ± 14 of 4 0.32Down
Larval tubule31 ± 34 of 4 0.30Down
Larval hindgut49 ± 34 of 4 0.51Down
Larval fat body65 ± 84 of 4 0.70Down
Larval trachea110 ± 84 of 4 1.14None
Larval carcass73 ± 34 of 4 0.76Down
S2 cells (growing)157 ± 104 of 4 1.62Up
Whole fly96 ± 44 of 4

Looking for FBgn0261004. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime