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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261014 through 18771 annotations produced 1 hits



ter94 (TER94):

Annotation Number : CG2331
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261014
Gbrowse : chr2R:5876665-5881064 (+) // 99.87 //
Probeset : 1628008_a_at
Accessions : protein= NP_001097249; /// NP_001097250; /// NP_477369; /// NP_724866;, nucleotide= NM_001103779; /// NM_001103780; /// NM_058021; /// NM_165726;
Pathway : 0000502 // proteasome complex // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annot
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004176 // ATP-dependent peptidase activity //
FlyMine data for FBgn0261014.
Homophila reports that CG2331 is a close match (3e-21) to human gene CAR;CMAR;PGN;SPG7 (NP_955399), a gene associated with Spastic paraplegia-7, 607259 (3).
BioGrid reports that CG2331 interacts with CG30011 CG4167 CG9238 .
TRiP has 3 RNAi stocks for FBgn0261014 available for purchase.
VDRC has 1 RNAi stocks for FBgn0261014 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain531 94 of 4 0.40Down
Head849 244 of 4 0.60Down
Eye766 214 of 4 0.53Down
Thoracicoabdominal ganglion616 224 of 4 0.40Down
Salivary gland997 74 of 4 0.69Down
Crop1085 194 of 4 0.70Down
Midgut1159 324 of 4 0.80Down
Tubule1101 884 of 4 0.80Down
Hindgut801 134 of 4 0.60Down
Heart1920 564 of 4 1.32Up
Fat body2135 704 of 4 1.47Up
Ovary1755 104 of 4 1.20Up
Testis1710 364 of 4 1.20Up
Male accessory glands1082 934 of 4 0.70Down
Virgin spermatheca1652 874 of 4 1.14None
Mated spermatheca1497 284 of 4 1.03None
Adult carcass1610 554 of 4 1.10None
Larval CNS1601 484 of 4 1.10None
Larval Salivary gland2608 764 of 4 1.79Up
Larval midgut1811 1414 of 4 1.25None
Larval tubule2782 184 of 4 1.90Up
Larval hindgut1781 994 of 4 1.23Up
Larval fat body2046 1164 of 4 1.40Up
Larval trachea1372 1774 of 4 0.94None
Larval carcass2413 1614 of 4 1.66Up
S2 cells (growing)1561 204 of 4 1.07None
Whole fly1453 624 of 4

Looking for FBgn0261014. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime