FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261015 through 18771 annotations produced 4 hits

PFTAIRE-interacting factor 1A (Pif1A):

Annotation Number : CG11776
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261015
Gbrowse : chr3R:4623041-4623623 (-) // 100.0 //
Probeset : 1641301_at
Accessions : protein= NP_001027157; /// NP_001027158; /// NP_001163556; /// NP_649834;, nucleotide= NM_001031986; /// NM_001031986; /// NM_001031987; /// NM_001031987; /// NM_001170085; /// NM_141577; /// NM_141577;
Pathway : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0261015.
BioGrid reports that CG11776 interacts with CG12433 CG13871 CG14818 CG5107 CG7047 CG15631 CG4818 CG6251 CG7809 CG9893 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 .
VDRC has 3 RNAi stocks for FBgn0261015 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	27 ± 1	4 of 4	2.00	Up
Head	20 ± 3	3 of 4	1.50	None
Eye	28 ± 2	4 of 4	2.09	Up
Thoracicoabdominal ganglion	28 ± 1	4 of 4	2.10	Up
Salivary gland	12 ± 3	0 of 4	0.92	None
Crop	23 ± 3	4 of 4	1.70	Up
Midgut	27 ± 2	3 of 4	2.00	Up
Tubule	8 ± 1	0 of 4	0.60	Down
Hindgut	18 ± 1	2 of 4	1.40	None
Heart	33 ± 2	4 of 4	2.45	Up
Fat body	15 ± 1	1 of 4	1.15	None
Ovary	7 ± 0	0 of 4	0.50	Down
Testis	5 ± 0	0 of 4	0.40	Down
Male accessory glands	20 ± 1	3 of 4	1.50	Up
Virgin spermatheca	11 ± 3	1 of 4	0.81	None
Mated spermatheca	15 ± 2	2 of 4	1.09	None
Adult carcass	44 ± 4	3 of 4	3.20	Up
Larval CNS	8 ± 0	0 of 4	0.61	Down
Larval Salivary gland	5 ± 3	0 of 4	0.43	None
Larval midgut	7 ± 2	0 of 4	0.57	None
Larval tubule	13 ± 3	0 of 4	1.00	None
Larval hindgut	12 ± 0	3 of 4	0.94	None
Larval fat body	23 ± 3	1 of 4	1.70	None
Larval trachea	3 ± 1	0 of 4	0.26	Down
Larval carcass	15 ± 0	1 of 4	1.09	None
S2 cells (growing)	25 ± 3	4 of 4	1.82	None
Whole fly	13 ± 1	2 of 4

PFTAIRE-interacting factor 1A /// PFTAIRE-interacting factor 1B (Pif1A /// Pif1B):

Annotation Number : CG32940
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046874 /// FBgn0261015
Gbrowse : chr3R:4600007-4616263 (-) // 100.0 //
Probeset : 1625843_s_at
Accessions : protein= NP_001027155; /// NP_001027156; /// NP_001027157; /// NP_001027158; /// NP_001163556; /// NP_649834;, nucleotide= NM_001031984; /// NM_001031985; /// NM_001031986; /// NM_001031986; /// NM_001031987; /// NM_001031987; /// NM_001170085; /// NM_141577; /// NM_141577;
Pathway : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0046874 /// FBgn0261015.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	901 ± 27	4 of 4	1.60	Up
Head	1195 ± 75	4 of 4	2.10	Up
Eye	1159 ± 31	4 of 4	2.05	Up
Thoracicoabdominal ganglion	1589 ± 32	4 of 4	2.80	Up
Salivary gland	71 ± 8	4 of 4	0.13	Down
Crop	1395 ± 47	4 of 4	2.50	Up
Midgut	245 ± 11	4 of 4	0.40	Down
Tubule	140 ± 14	4 of 4	0.20	Down
Hindgut	761 ± 14	4 of 4	1.30	Up
Heart	1142 ± 81	4 of 4	2.02	Up
Fat body	889 ± 102	4 of 4	1.57	Up
Ovary	31 ± 2	4 of 4	0.10	Down
Testis	928 ± 20	4 of 4	1.60	Up
Male accessory glands	404 ± 14	4 of 4	0.70	Down
Virgin spermatheca	1038 ± 57	4 of 4	1.83	Up
Mated spermatheca	910 ± 83	4 of 4	1.61	Up
Adult carcass	1844 ± 22	4 of 4	3.30	Up
Larval CNS	299 ± 30	4 of 4	0.53	Down
Larval Salivary gland	19 ± 0	4 of 4	0.03	Down
Larval midgut	143 ± 6	4 of 4	0.25	Down
Larval tubule	285 ± 33	4 of 4	0.50	Down
Larval hindgut	708 ± 19	4 of 4	1.25	Up
Larval fat body	455 ± 19	4 of 4	0.80	Down
Larval trachea	192 ± 54	4 of 4	0.34	Down
Larval carcass	2136 ± 52	4 of 4	3.77	Up
S2 cells (growing)	444 ± 5	4 of 4	0.79	Down
Whole fly	566 ± 26	4 of 4

():

Annotation Number : HDC12553
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:4618732-4619810 (-) // 100.0 //
Probeset : 1626927_at
Accessions : protein= NP_001027157; /// NP_001027158; /// NP_001163556; /// NP_649834;, nucleotide= NM_001031986; /// NM_001031986; /// NM_001031987; /// NM_001031987; /// NM_001170085; /// NM_141577; /// NM_141577;
Pathway : DNA-dependent // inferred from electronic annotation"

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 3	4 of 4	1.40	None
Head	13 ± 1	4 of 4	1.20	None
Eye	23 ± 1	4 of 4	1.95	Up
Thoracicoabdominal ganglion	16 ± 2	4 of 4	1.40	None
Salivary gland	11 ± 3	0 of 4	0.97	None
Crop	19 ± 1	4 of 4	1.70	Up
Midgut	6 ± 2	1 of 4	0.60	None
Tubule	5 ± 1	0 of 4	0.40	Down
Hindgut	16 ± 3	4 of 4	1.40	None
Heart	40 ± 5	4 of 4	3.45	Up
Fat body	10 ± 2	4 of 4	0.92	None
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	6 ± 0	2 of 4	0.50	None
Male accessory glands	9 ± 2	0 of 4	0.80	None
Virgin spermatheca	6 ± 1	1 of 4	0.58	None
Mated spermatheca	9 ± 0	1 of 4	0.76	None
Adult carcass	23 ± 2	4 of 4	2.00	Up
Larval CNS	3 ± 1	2 of 4	0.30	Down
Larval Salivary gland	3 ± 1	1 of 4	0.32	Down
Larval midgut	2 ± 1	0 of 4	0.22	Down
Larval tubule	6 ± 3	2 of 4	0.50	None
Larval hindgut	8 ± 0	3 of 4	0.71	None
Larval fat body	8 ± 1	1 of 4	0.70	None
Larval trachea	3 ± 2	0 of 4	0.28	Down
Larval carcass	12 ± 1	3 of 4	1.07	None
S2 cells (growing)	9 ± 1	2 of 4	0.81	None
Whole fly	11 ± 2	3 of 4

PFTAIRE-interacting factor 1A (Pif1A):

Annotation Number : CG32940
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261015
Gbrowse : chr3R:4606668-4616263 (-) // 100.0 //
Probeset : 1629130_at
Accessions : protein= NP_001027157; /// NP_001027158; /// NP_001163556; /// NP_649834;, nucleotide= NM_001031986; /// NM_001031986; /// NM_001031987; /// NM_001031987; /// NM_001170085; /// NM_141577; /// NM_141577;
Pathway : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0261015.
VDRC has 3 RNAi stocks for FBgn0261015 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.10	Down
Head	1 ± 0	0 of 4	0.10	Down
Eye	4 ± 1	0 of 4	0.15	Down
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.10	Down
Salivary gland	9 ± 2	0 of 4	0.31	Down
Crop	1 ± 0	0 of 4	0.10	Down
Midgut	2 ± 0	0 of 4	0.10	Down
Tubule	2 ± 0	0 of 4	0.10	Down
Hindgut	2 ± 0	0 of 4	0.10	Down
Heart	5 ± 1	0 of 4	0.20	Down
Fat body	1 ± 0	0 of 4	0.04	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	539 ± 10	4 of 4	18.70	Up
Male accessory glands	2 ± 1	0 of 4	0.10	Down
Virgin spermatheca	4 ± 1	1 of 4	0.16	Down
Mated spermatheca	7 ± 0	2 of 4	0.25	Down
Adult carcass	1 ± 0	0 of 4	0.10	Down
Larval CNS	1 ± 0	0 of 4	0.04	Down
Larval Salivary gland	5 ± 1	0 of 4	0.20	Down
Larval midgut	5 ± 1	1 of 4	0.17	Down
Larval tubule	2 ± 0	0 of 4	0.10	Down
Larval hindgut	2 ± 1	0 of 4	0.07	Down
Larval fat body	38 ± 21	3 of 4	1.30	None
Larval trachea	1 ± 2	0 of 4	0.05	Down
Larval carcass	4 ± 2	0 of 4	0.16	Down
S2 cells (growing)	3 ± 1	1 of 4	0.13	Down
Whole fly	28 ± 1	4 of 4

Looking for FBgn0261015. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720