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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0261016 through 18771 annotations produced 3 hits


CG12928 (clos):

Annotation Number : CG1863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261016
Gbrowse : chr2R:5482397-5484802 (-) // 100.0 //
Probeset : 1640882_at
Accessions : protein= NP_001097246;, nucleotide= NM_001103776;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0261016.
VDRC has 12 RNAi stocks for FBgn0261016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland4 ± 20 of 4 0.29Down
Crop3 ± 10 of 4 0.20Down
Midgut0 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.04Down
Fat body2 ± 20 of 4 0.18Down
Ovary42 ± 24 of 4 3.10Up
Testis2 ± 10 of 4 0.20Down
Male accessory glands2 ± 10 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.09Down
Mated spermatheca1 ± 00 of 4 0.13Down
Adult carcass4 ± 20 of 4 0.30Down
Larval CNS1 ± 10 of 4 0.10Down
Larval Salivary gland1 ± 00 of 4 0.10Down
Larval midgut1 ± 00 of 4 0.14Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut3 ± 00 of 4 0.23Down
Larval fat body1 ± 10 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.10Down
Larval carcass2 ± 00 of 4 0.18Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly13 ± 14 of 4


CG12928 (clos):

Annotation Number : CG12927
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261016
Gbrowse : chr2R:5480474-5481107 (-) // 100.0 //
Probeset : 1627229_at
Accessions : protein= NP_001097246;, nucleotide= NM_001103776;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0261016.
VDRC has 12 RNAi stocks for FBgn0261016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion3 ± 20 of 4 0.10Down
Salivary gland16 ± 50 of 4 0.46Down
Crop6 ± 20 of 4 0.20Down
Midgut6 ± 20 of 4 0.20Down
Tubule5 ± 10 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.06Down
Fat body4 ± 30 of 4 0.13Down
Ovary100 ± 24 of 4 2.80Up
Testis8 ± 10 of 4 0.20Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca8 ± 20 of 4 0.23Down
Mated spermatheca3 ± 00 of 4 0.09Down
Adult carcass9 ± 40 of 4 0.30Down
Larval CNS2 ± 00 of 4 0.06Down
Larval Salivary gland10 ± 10 of 4 0.30Down
Larval midgut4 ± 10 of 4 0.12Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.08Down
Larval fat body4 ± 00 of 4 0.10Down
Larval trachea5 ± 20 of 4 0.16Down
Larval carcass3 ± 00 of 4 0.09Down
S2 cells (growing)5 ± 00 of 4 0.15Down
Whole fly36 ± 04 of 4


CG12928 (clos):

Annotation Number : CG12928
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261016
Gbrowse : chr2R:5475510-5476716 (-) // 100.0 //
Probeset : 1622959_at
Accessions : protein= NP_001097246;, nucleotide= NM_001103776;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0261016.
VDRC has 12 RNAi stocks for FBgn0261016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 20 of 4 0.10Down
Head11 ± 10 of 4 0.10Down
Eye8 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion10 ± 11 of 4 0.10Down
Salivary gland28 ± 30 of 4 0.25Down
Crop14 ± 11 of 4 0.10Down
Midgut13 ± 21 of 4 0.10Down
Tubule17 ± 60 of 4 0.20Down
Hindgut14 ± 13 of 4 0.10Down
Heart7 ± 11 of 4 0.06Down
Fat body22 ± 53 of 4 0.19Down
Ovary389 ± 54 of 4 3.40Up
Testis45 ± 14 of 4 0.40Down
Male accessory glands27 ± 43 of 4 0.20Down
Virgin spermatheca15 ± 02 of 4 0.13Down
Mated spermatheca11 ± 10 of 4 0.10Down
Adult carcass20 ± 61 of 4 0.20Down
Larval CNS9 ± 21 of 4 0.09Down
Larval Salivary gland14 ± 21 of 4 0.13Down
Larval midgut16 ± 13 of 4 0.14Down
Larval tubule16 ± 21 of 4 0.10Down
Larval hindgut14 ± 02 of 4 0.13Down
Larval fat body21 ± 22 of 4 0.20Down
Larval trachea13 ± 20 of 4 0.11Down
Larval carcass14 ± 11 of 4 0.12Down
S2 cells (growing)19 ± 12 of 4 0.17Down
Whole fly114 ± 44 of 4

Looking for FBgn0261016. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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