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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261019 through 18771 annotations produced 1 hits



modigliani /// lethal (3) S096713 (moi /// tatl):

Annotation Number : CG31241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260241 /// FBgn0261019
Gbrowse : chr3R:14081251-14083330 (+) // 100.0 //
Probeset : 1640315_at
Accessions : protein= NP_001138073; /// NP_732316;, nucleotide= NM_001144601; /// NM_169801;
Pathway : "0000781 // chromosome
Interpro : telomeric region // inferred from direct assay"
FlyMine data for FBgn0260241 /// FBgn0261019.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 44 of 4 1.30Up
Head58 34 of 4 1.00None
Eye50 44 of 4 0.89None
Thoracicoabdominal ganglion54 24 of 4 0.90None
Salivary gland68 44 of 4 1.19None
Crop78 44 of 4 1.40Up
Midgut44 34 of 4 0.80Down
Tubule59 14 of 4 1.00None
Hindgut57 24 of 4 1.00None
Heart46 24 of 4 0.81Down
Fat body46 34 of 4 0.81Down
Ovary91 54 of 4 1.60Up
Testis28 14 of 4 0.50Down
Male accessory glands67 54 of 4 1.20None
Virgin spermatheca38 34 of 4 0.68Down
Mated spermatheca35 14 of 4 0.63Down
Adult carcass46 24 of 4 0.80Down
Larval CNS89 64 of 4 1.56Up
Larval Salivary gland45 44 of 4 0.79Down
Larval midgut29 24 of 4 0.51Down
Larval tubule56 34 of 4 1.00None
Larval hindgut44 34 of 4 0.78Down
Larval fat body45 34 of 4 0.80Down
Larval trachea47 74 of 4 0.83None
Larval carcass41 04 of 4 0.73Down
S2 cells (growing)78 24 of 4 1.38Up
Whole fly57 24 of 4

Looking for FBgn0261019. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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