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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261041 through 18771 annotations produced 1 hits



straightjacket (stj):

Annotation Number : CG12295
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261041
Gbrowse : chr2R:9692978-9707076 (+) // 99.94 //
Probeset : 1627533_at
Accessions : protein= NP_610902;, nucleotide= NM_137058;
Pathway : 0005891 // voltage-gated calcium channel complex // inferred from sequence or structural similarity /// 0016020 // membr
Interpro : 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity
FlyMine data for FBgn0261041.
Homophila reports that CG12295 is a close match (2e-91) to human gene CACNA2D4;RCD4 (NP_758952), a gene associated with Retinal cone dystrophy 4, 610478 (3).
TRiP has 1 RNAi stocks for FBgn0261041 available for purchase.
VDRC has 1 RNAi stocks for FBgn0261041 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain805 ± 394 of 437.00Up
Head144 ± 124 of 4 6.60Up
Eye508 ± 294 of 423.37Up
Thoracicoabdominal ganglion794 ± 214 of 436.50Up
Salivary gland12 ± 41 of 4 0.59None
Crop4 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule6 ± 00 of 4 0.30Down
Hindgut3 ± 10 of 4 0.10Down
Heart9 ± 13 of 4 0.45Down
Fat body20 ± 34 of 4 0.94None
Ovary2 ± 00 of 4 0.10Down
Testis6 ± 02 of 4 0.30Down
Male accessory glands10 ± 30 of 4 0.50Down
Virgin spermatheca9 ± 21 of 4 0.42Down
Mated spermatheca7 ± 12 of 4 0.34Down
Adult carcass10 ± 40 of 4 0.50None
Larval CNS226 ± 174 of 410.41Up
Larval Salivary gland3 ± 10 of 4 0.17Down
Larval midgut5 ± 20 of 4 0.25Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.14Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea7 ± 61 of 4 0.32Down
Larval carcass3 ± 10 of 4 0.15Down
S2 cells (growing)96 ± 34 of 4 4.44Up
Whole fly21 ± 14 of 4

Looking for FBgn0261041. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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