FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261049 through 18771 annotations produced 1 hits

Vacuolar protein sorting 45 (Vps45):

Annotation Number : CG8228
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261049
Gbrowse : chr3R:5389702-5391814 (+) // 100.0 //
Probeset : 1632110_at
Accessions : protein= NP_649909;, nucleotide= NM_141652;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement
Interpro : 0000149 // SNARE binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0261049.
Homophila reports that CG8228 is a close match (4e-19) to human gene STXBP1;UNC18;EIEE4 (NP_001027392), a gene associated with Epileptic encephalopathy, early infantile, 4, 612164 (2).
BioGrid reports that CG8228 interacts with CG8506 CG8929 CG9282 CG9653 .
TRiP has 1 RNAi stocks for FBgn0261049 available for purchase.
VDRC has 1 RNAi stocks for FBgn0261049 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	121 ± 3	4 of 4	2.40	Up
Head	54 ± 6	4 of 4	1.10	None
Eye	103 ± 1	4 of 4	2.04	Up
Thoracicoabdominal ganglion	92 ± 3	4 of 4	1.80	Up
Salivary gland	78 ± 4	4 of 4	1.54	Up
Crop	46 ± 2	4 of 4	0.90	None
Midgut	65 ± 1	4 of 4	1.30	Up
Tubule	74 ± 3	4 of 4	1.50	Up
Hindgut	64 ± 2	4 of 4	1.30	Up
Heart	38 ± 0	4 of 4	0.75	Down
Fat body	26 ± 4	1 of 4	0.51	Down
Ovary	118 ± 4	4 of 4	2.30	Up
Testis	29 ± 2	4 of 4	0.60	Down
Male accessory glands	51 ± 6	4 of 4	1.00	None
Virgin spermatheca	32 ± 0	4 of 4	0.63	Down
Mated spermatheca	34 ± 2	4 of 4	0.68	Down
Adult carcass	25 ± 3	3 of 4	0.50	Down
Larval CNS	84 ± 3	4 of 4	1.67	Up
Larval Salivary gland	79 ± 3	4 of 4	1.56	Up
Larval midgut	51 ± 4	4 of 4	1.02	None
Larval tubule	79 ± 2	4 of 4	1.60	Up
Larval hindgut	56 ± 2	4 of 4	1.11	None
Larval fat body	40 ± 5	4 of 4	0.80	None
Larval trachea	38 ± 2	4 of 4	0.75	Down
Larval carcass	43 ± 1	4 of 4	0.85	None
S2 cells (growing)	84 ± 4	4 of 4	1.65	Up
Whole fly	50 ± 3	4 of 4

Looking for FBgn0261049. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720