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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261049 through 18771 annotations produced 1 hits



Vacuolar protein sorting 45 (Vps45):

Annotation Number : CG8228
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261049
Gbrowse : chr3R:5389702-5391814 (+) // 100.0 //
Probeset : 1632110_at
Accessions : protein= NP_649909;, nucleotide= NM_141652;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement
Interpro : 0000149 // SNARE binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0261049.
Homophila reports that CG8228 is a close match (4e-19) to human gene STXBP1;UNC18;EIEE4 (NP_001027392), a gene associated with Epileptic encephalopathy, early infantile, 4, 612164 (2).
BioGrid reports that CG8228 interacts with CG8506 CG8929 CG9282 CG9653 .
TRiP has 1 RNAi stocks for FBgn0261049 available for purchase.
VDRC has 1 RNAi stocks for FBgn0261049 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 34 of 4 2.40Up
Head54 64 of 4 1.10None
Eye103 14 of 4 2.04Up
Thoracicoabdominal ganglion92 34 of 4 1.80Up
Salivary gland78 44 of 4 1.54Up
Crop46 24 of 4 0.90None
Midgut65 14 of 4 1.30Up
Tubule74 34 of 4 1.50Up
Hindgut64 24 of 4 1.30Up
Heart38 04 of 4 0.75Down
Fat body26 41 of 4 0.51Down
Ovary118 44 of 4 2.30Up
Testis29 24 of 4 0.60Down
Male accessory glands51 64 of 4 1.00None
Virgin spermatheca32 04 of 4 0.63Down
Mated spermatheca34 24 of 4 0.68Down
Adult carcass25 33 of 4 0.50Down
Larval CNS84 34 of 4 1.67Up
Larval Salivary gland79 34 of 4 1.56Up
Larval midgut51 44 of 4 1.02None
Larval tubule79 24 of 4 1.60Up
Larval hindgut56 24 of 4 1.11None
Larval fat body40 54 of 4 0.80None
Larval trachea38 24 of 4 0.75Down
Larval carcass43 14 of 4 0.85None
S2 cells (growing)84 44 of 4 1.65Up
Whole fly50 34 of 4

Looking for FBgn0261049. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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