FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261053 through 18771 annotations produced 3 hits

CG4509 (Cad86C):

Annotation Number : CG4509
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261053
Gbrowse : chr3R:6668511-6674224 (+) // 100.0 //
Probeset : 1623112_at
Accessions : protein= NP_788635;, nucleotide= NM_176458;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0261053.
Homophila reports that CG4509 is a close match (3e-11) to human gene ARVD11;DSC2;DSC3 (NP_004940), a gene associated with Arrhythmogenic right ventricular dysplasia, familial, 11, 610476 (3).
TRiP has 2 RNAi stocks for FBgn0261053 available for purchase.
VDRC has 8 RNAi stocks for FBgn0261053 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	1 of 4	0.30	Down
Head	16 ± 3	4 of 4	1.50	None
Eye	19 ± 2	4 of 4	1.78	Up
Thoracicoabdominal ganglion	5 ± 1	0 of 4	0.50	Down
Salivary gland	17 ± 3	0 of 4	1.56	None
Crop	9 ± 1	1 of 4	0.80	None
Midgut	6 ± 1	0 of 4	0.60	None
Tubule	6 ± 0	0 of 4	0.60	Down
Hindgut	143 ± 9	4 of 4	12.80	Up
Heart	10 ± 1	0 of 4	0.90	None
Fat body	10 ± 3	0 of 4	0.97	None
Ovary	7 ± 1	1 of 4	0.60	Down
Testis	8 ± 0	3 of 4	0.80	None
Male accessory glands	4 ± 2	0 of 4	0.40	Down
Virgin spermatheca	8 ± 1	0 of 4	0.75	None
Mated spermatheca	7 ± 2	0 of 4	0.66	None
Adult carcass	19 ± 1	2 of 4	1.80	Up
Larval CNS	15 ± 4	4 of 4	1.42	None
Larval Salivary gland	7 ± 1	0 of 4	0.66	None
Larval midgut	5 ± 1	0 of 4	0.48	Down
Larval tubule	6 ± 1	0 of 4	0.50	Down
Larval hindgut	29 ± 3	4 of 4	2.58	Up
Larval fat body	11 ± 2	1 of 4	1.00	None
Larval trachea	111 ± 21	4 of 4	9.90	Up
Larval carcass	20 ± 3	4 of 4	1.84	Up
S2 cells (growing)	5 ± 1	0 of 4	0.46	Down
Whole fly	11 ± 1	3 of 4

CG4509 (Cad86C):

Annotation Number : CG4655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261053
Gbrowse : chr3R:6663114-6667710 (+) // 100.0 //
Probeset : 1638442_at
Accessions : protein= NP_788635;, nucleotide= NM_176458;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0261053.
Homophila reports that CG4655 is a close match (9e-12) to human gene CDH23;USH1D (NP_071407), a gene associated with Deafness, autosomal recessive 12, 601386 (3);Usher syndrome, type 1D, 601067 (3);Usher syndrome, type 1D/F digenic, 601067 (3).
BioGrid reports that CG4655 interacts with CG6608 .
TRiP has 2 RNAi stocks for FBgn0261053 available for purchase.
VDRC has 8 RNAi stocks for FBgn0261053 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	2.00	None
Head	0 ± 0	0 of 4	0.60	None
Eye	0 ± 0	0 of 4	0.76	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.70	None
Salivary gland	2 ± 0	0 of 4	2.02	None
Crop	1 ± 0	0 of 4	0.80	None
Midgut	2 ± 0	0 of 4	1.60	None
Tubule	0 ± 0	0 of 4	0.70	Down
Hindgut	13 ± 2	2 of 4	10.20	Up
Heart	1 ± 0	0 of 4	0.90	None
Fat body	1 ± 2	0 of 4	1.45	None
Ovary	1 ± 0	0 of 4	0.80	None
Testis	2 ± 0	0 of 4	1.60	None
Male accessory glands	3 ± 1	0 of 4	2.90	None
Virgin spermatheca	1 ± 0	0 of 4	1.20	None
Mated spermatheca	1 ± 0	0 of 4	0.80	None
Adult carcass	7 ± 5	0 of 4	6.10	None
Larval CNS	2 ± 1	0 of 4	1.86	None
Larval Salivary gland	2 ± 1	0 of 4	1.63	None
Larval midgut	1 ± 0	0 of 4	0.84	None
Larval tubule	2 ± 0	0 of 4	1.80	None
Larval hindgut	2 ± 0	0 of 4	1.90	None
Larval fat body	4 ± 1	0 of 4	3.40	None
Larval trachea	11 ± 6	3 of 4	9.39	Up
Larval carcass	1 ± 0	0 of 4	1.47	None
S2 cells (growing)	1 ± 0	0 of 4	1.45	None
Whole fly	1 ± 0	0 of 4

CG4509 (Cad86C):

Annotation Number : CG4655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261053
Gbrowse : chr3R:6663114-6667710 (+) // 100.0 //
Probeset : 1626639_a_at
Accessions : protein= NP_788635;, nucleotide= NM_176458;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0261053.
Homophila reports that CG4655 is a close match (9e-12) to human gene CDH23;USH1D (NP_071407), a gene associated with Deafness, autosomal recessive 12, 601386 (3);Usher syndrome, type 1D, 601067 (3);Usher syndrome, type 1D/F digenic, 601067 (3).
BioGrid reports that CG4655 interacts with CG6608 .
TRiP has 2 RNAi stocks for FBgn0261053 available for purchase.
VDRC has 8 RNAi stocks for FBgn0261053 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	1.50	None
Head	3 ± 0	0 of 4	1.10	None
Eye	2 ± 0	0 of 4	0.98	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.90	None
Salivary gland	22 ± 2	0 of 4	7.72	Up
Crop	8 ± 2	0 of 4	3.00	None
Midgut	7 ± 2	0 of 4	2.70	None
Tubule	2 ± 0	0 of 4	1.00	None
Hindgut	30 ± 6	1 of 4	10.30	Up
Heart	4 ± 1	0 of 4	1.40	None
Fat body	9 ± 7	0 of 4	3.21	None
Ovary	2 ± 1	0 of 4	1.00	None
Testis	5 ± 2	0 of 4	1.70	None
Male accessory glands	10 ± 4	0 of 4	3.60	None
Virgin spermatheca	21 ± 2	0 of 4	7.36	Up
Mated spermatheca	21 ± 6	0 of 4	7.48	None
Adult carcass	7 ± 3	0 of 4	2.70	None
Larval CNS	10 ± 5	1 of 4	3.77	None
Larval Salivary gland	8 ± 2	0 of 4	2.78	None
Larval midgut	6 ± 1	0 of 4	2.21	None
Larval tubule	2 ± 0	0 of 4	0.70	None
Larval hindgut	2 ± 0	0 of 4	0.72	None
Larval fat body	6 ± 0	0 of 4	2.40	Up
Larval trachea	27 ± 7	4 of 4	9.41	Up
Larval carcass	2 ± 0	0 of 4	0.92	None
S2 cells (growing)	1 ± 0	0 of 4	0.59	None
Whole fly	2 ± 1	0 of 4

Looking for FBgn0261053. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720