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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261064 through 18771 annotations produced 1 hits



dRabenosyn (Rbsn-5):

Annotation Number : CG8506
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261064
Gbrowse : chr2L:8159838-8161797 (+) // 100.0 //
Probeset : 1632516_at
Accessions : protein= NP_609186;, nucleotide= NM_135342;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0261064.
BioGrid reports that CG8506 interacts with CG8622 CG9688 .
VDRC has 2 RNAi stocks for FBgn0261064 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain106 44 of 4 1.20Up
Head62 24 of 4 0.70Down
Eye90 24 of 4 0.99None
Thoracicoabdominal ganglion103 44 of 4 1.10None
Salivary gland124 104 of 4 1.37Up
Crop115 54 of 4 1.30Up
Midgut81 34 of 4 0.90None
Tubule118 24 of 4 1.30Up
Hindgut97 24 of 4 1.10None
Heart95 44 of 4 1.05None
Fat body38 14 of 4 0.42Down
Ovary220 24 of 4 2.40Up
Testis152 34 of 4 1.70Up
Male accessory glands69 34 of 4 0.80Down
Virgin spermatheca45 24 of 4 0.50Down
Mated spermatheca49 24 of 4 0.55Down
Adult carcass50 14 of 4 0.50Down
Larval CNS99 44 of 4 1.09None
Larval Salivary gland109 54 of 4 1.20None
Larval midgut92 14 of 4 1.01None
Larval tubule110 34 of 4 1.20Up
Larval hindgut114 44 of 4 1.25Up
Larval fat body68 64 of 4 0.80Down
Larval trachea102 104 of 4 1.12None
Larval carcass71 24 of 4 0.78Down
S2 cells (growing)80 24 of 4 0.88None
Whole fly91 54 of 4

Looking for FBgn0261064. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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