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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261065 through 18771 annotations produced 1 hits



"cleavage and polyadenylation specificity factor ( 73kD-subunit"):

Annotation Number : CG7698
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr3R:14486838-14489250 (-) // 100.0 //
Probeset : 1637262_at
Accessions : protein= , nucleotide= NP_650738;
Pathway : 0006378 // mRNA polyadenylation // inferred from sequence or structural similarity /// 0006379 // mRNA cleavage // infer
Interpro : 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from sequence or structural similari
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 ± 04 of 4 0.70Down
Head55 ± 14 of 4 0.50Down
Eye38 ± 24 of 4 0.34Down
Thoracicoabdominal ganglion74 ± 44 of 4 0.70Down
Salivary gland62 ± 24 of 4 0.56Down
Crop70 ± 44 of 4 0.60Down
Midgut46 ± 24 of 4 0.40Down
Tubule82 ± 34 of 4 0.70Down
Hindgut59 ± 14 of 4 0.50Down
Heart38 ± 34 of 4 0.34Down
Fat body52 ± 94 of 4 0.47Down
Ovary243 ± 44 of 4 2.20Up
Testis67 ± 24 of 4 0.60Down
Male accessory glands69 ± 24 of 4 0.60Down
Virgin spermatheca73 ± 34 of 4 0.66Down
Mated spermatheca76 ± 64 of 4 0.69Down
Adult carcass46 ± 34 of 4 0.40Down
Larval CNS212 ± 34 of 4 1.91Up
Larval Salivary gland128 ± 54 of 4 1.15Up
Larval midgut47 ± 14 of 4 0.42Down
Larval tubule103 ± 44 of 4 0.90None
Larval hindgut75 ± 44 of 4 0.68Down
Larval fat body60 ± 24 of 4 0.50Down
Larval trachea110 ± 114 of 4 0.99None
Larval carcass73 ± 34 of 4 0.65Down
S2 cells (growing)152 ± 34 of 4 1.37Up
Whole fly111 ± 24 of 4

Looking for FBgn0261065. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime