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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261067 through 18771 annotations produced 1 hits



CG4279 (LSm1):

Annotation Number : CG4279
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261067
Gbrowse : chr2R:17057569-17058100 (-) // 100.0 //
Probeset : 1631263_at
Accessions : protein= NP_611559;, nucleotide= NM_137715;
Pathway : via spliceosome // inferred from sequence or structural similarity /// 0006396 // RNA processing // inferred from seque
Interpro : 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0030532 // small nuclear ribonucl
FlyMine data for FBgn0261067.
TRiP has 1 RNAi stocks for FBgn0261067 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261067 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 ± 54 of 4 0.90None
Head73 ± 64 of 4 0.60Down
Eye59 ± 24 of 4 0.52Down
Thoracicoabdominal ganglion77 ± 24 of 4 0.70Down
Salivary gland79 ± 43 of 4 0.70Down
Crop90 ± 44 of 4 0.80None
Midgut116 ± 54 of 4 1.00None
Tubule135 ± 24 of 4 1.20Up
Hindgut92 ± 34 of 4 0.80None
Heart126 ± 74 of 4 1.11None
Fat body71 ± 54 of 4 0.63Down
Ovary157 ± 44 of 4 1.40Up
Testis39 ± 24 of 4 0.30Down
Male accessory glands121 ± 74 of 4 1.10None
Virgin spermatheca74 ± 64 of 4 0.65Down
Mated spermatheca98 ± 34 of 4 0.86None
Adult carcass74 ± 53 of 4 0.60Down
Larval CNS182 ± 264 of 4 1.60Up
Larval Salivary gland143 ± 94 of 4 1.26None
Larval midgut56 ± 44 of 4 0.49Down
Larval tubule124 ± 44 of 4 1.10None
Larval hindgut82 ± 44 of 4 0.72None
Larval fat body74 ± 94 of 4 0.70Down
Larval trachea157 ± 254 of 4 1.39Up
Larval carcass70 ± 14 of 4 0.62Down
S2 cells (growing)172 ± 54 of 4 1.51Up
Whole fly113 ± 104 of 4

Looking for FBgn0261067. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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