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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0261086 through 18771 annotations produced 1 hits

syt14 (Syt14):

Annotation Number : CG9778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261086
Gbrowse : chr3R:141309-144791 (-) // 100.0 //
Probeset : 1628868_at
Accessions : protein= NP_649453;, nucleotide= NM_141196;
Interpro : 0005544 // calcium-dependent phospholipid binding // inferred from sequence or structural similarity
FlyMine data for FBgn0261086.
BioGrid reports that CG9778 interacts with CG9916 .
TRiP has 1 RNAi stocks for FBgn0261086 available for purchase.
VDRC has 1 RNAi stocks for FBgn0261086 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 14 of 422.10Up
Head9 40 of 4 4.60None
Eye0 00 of 4 0.43None
Thoracicoabdominal ganglion33 21 of 416.40Up
Salivary gland12 60 of 4 6.07None
Crop0 00 of 4 0.30None
Midgut1 00 of 4 0.70None
Tubule1 00 of 4 0.70Down
Hindgut0 00 of 4 0.30None
Heart1 00 of 4 0.62None
Fat body1 00 of 4 0.49None
Ovary0 00 of 4 0.30None
Testis29 31 of 414.50Up
Male accessory glands1 00 of 4 0.50None
Virgin spermatheca1 00 of 4 0.57None
Mated spermatheca1 00 of 4 0.62None
Adult carcass2 00 of 4 1.00None
Larval CNS15 30 of 4 7.75Up
Larval Salivary gland0 00 of 4 0.38None
Larval midgut1 00 of 4 0.62None
Larval tubule2 10 of 4 1.00None
Larval hindgut0 00 of 4 0.28None
Larval fat body4 20 of 4 2.30None
Larval trachea0 00 of 4 0.42None
Larval carcass1 00 of 4 0.85None
S2 cells (growing)0 00 of 4 0.44None
Whole fly2 10 of 4

Looking for FBgn0261086. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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