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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261109 through 18771 annotations produced 1 hits



marionette (mrn):

Annotation Number : CG7764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261109
Gbrowse : chr3L:15571868-15573775 (-) // 99.78 //
Probeset : 1630492_at
Accessions : protein= NP_648780;, nucleotide= NM_140523;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II pro
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005675 // holo TFIIH complex // inferred from sequence or
FlyMine data for FBgn0261109.
BioGrid reports that CG7764 interacts with CG9401 .
VDRC has 3 RNAi stocks for FBgn0261109 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 14 of 4 0.60Down
Head58 ± 44 of 4 0.40Down
Eye75 ± 34 of 4 0.55Down
Thoracicoabdominal ganglion86 ± 14 of 4 0.60Down
Salivary gland50 ± 64 of 4 0.37Down
Crop89 ± 44 of 4 0.70Down
Midgut47 ± 14 of 4 0.30Down
Tubule89 ± 64 of 4 0.70Down
Hindgut64 ± 34 of 4 0.50Down
Heart98 ± 44 of 4 0.72Down
Fat body72 ± 44 of 4 0.53Down
Ovary204 ± 24 of 4 1.50Up
Testis191 ± 84 of 4 1.40Up
Male accessory glands145 ± 64 of 4 1.10None
Virgin spermatheca76 ± 24 of 4 0.56Down
Mated spermatheca105 ± 24 of 4 0.78Down
Adult carcass60 ± 24 of 4 0.40Down
Larval CNS265 ± 104 of 4 1.95Up
Larval Salivary gland174 ± 84 of 4 1.28Up
Larval midgut57 ± 24 of 4 0.42Down
Larval tubule74 ± 44 of 4 0.50Down
Larval hindgut95 ± 04 of 4 0.70Down
Larval fat body75 ± 54 of 4 0.60Down
Larval trachea222 ± 214 of 4 1.63Up
Larval carcass106 ± 54 of 4 0.78Down
S2 cells (growing)180 ± 74 of 4 1.32Up
Whole fly136 ± 84 of 4

Looking for FBgn0261109. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime