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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261111 through 18771 annotations produced 1 hits



Birt-Hogg-Dube homolog (BHD):

Annotation Number : CG8616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261111
Gbrowse : chr3L:7231641-7233353 (+) // 100.0 //
Probeset : 1623357_at
Accessions : protein= NP_648090;, nucleotide= NM_139833;
Pathway : 0005737 // cytoplasm // inferred from direct assay
FlyMine data for FBgn0261111.
Homophila reports that CG8616 is a close match (7e-32) to human gene BHD;FLCN (NP_653207), a gene associated with Birt-Hogg-Dube syndrome, 135150 (3);Colorectal cancer, somatic, 114500 (3);Pneumothorax, primary spontaneous, 173600 (3);Renal carcinoma, chromophobe, somatic, 144700 (3).
VDRC has 3 RNAi stocks for FBgn0261111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 24 of 4 1.70Up
Head40 04 of 4 0.90None
Eye45 14 of 4 1.02None
Thoracicoabdominal ganglion65 34 of 4 1.50Up
Salivary gland139 84 of 4 3.17Up
Crop110 54 of 4 2.50Up
Midgut41 24 of 4 1.00None
Tubule145 84 of 4 3.30Up
Hindgut99 24 of 4 2.30Up
Heart47 24 of 4 1.07None
Fat body37 44 of 4 0.84None
Ovary87 44 of 4 2.00Up
Testis43 14 of 4 1.00None
Male accessory glands67 54 of 4 1.50Up
Virgin spermatheca112 94 of 4 2.55Up
Mated spermatheca115 64 of 4 2.63Up
Adult carcass44 64 of 4 1.00None
Larval CNS119 204 of 4 2.72Up
Larval Salivary gland94 34 of 4 2.13Up
Larval midgut43 14 of 4 0.98None
Larval tubule76 34 of 4 1.70Up
Larval hindgut98 84 of 4 2.24Up
Larval fat body36 44 of 4 0.80None
Larval trachea64 64 of 4 1.45Up
Larval carcass53 24 of 4 1.22None
S2 cells (growing)56 14 of 4 1.29None
Whole fly44 44 of 4

Looking for FBgn0261111. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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