FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261112 through 18771 annotations produced 1 hits

beta-Amyloid precursor protein binding protein 1 (APP-BP1):

Annotation Number : CG7828
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261112
Gbrowse : chr3L:11091511-11093686 (+) // 100.0 //
Probeset : 1631367_at
Accessions : protein= NP_648435;, nucleotide= NM_140178;
Pathway : 0005626 // insoluble fraction // inferred from sequence or structural similarity
Interpro : 0001540 // beta-amyloid binding // inferred from physical interaction /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0261112.
VDRC has 1 RNAi stocks for FBgn0261112 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	87 ± 4	4 of 4	0.90	Down
Head	41 ± 2	4 of 4	0.40	Down
Eye	47 ± 4	4 of 4	0.46	Down
Thoracicoabdominal ganglion	119 ± 5	4 of 4	1.20	None
Salivary gland	47 ± 3	0 of 4	0.46	Down
Crop	44 ± 2	4 of 4	0.40	Down
Midgut	42 ± 6	0 of 4	0.40	Down
Tubule	63 ± 3	4 of 4	0.60	Down
Hindgut	44 ± 1	3 of 4	0.40	Down
Heart	33 ± 2	4 of 4	0.33	Down
Fat body	33 ± 3	4 of 4	0.33	Down
Ovary	112 ± 8	4 of 4	1.10	None
Testis	515 ± 20	4 of 4	5.00	Up
Male accessory glands	73 ± 3	4 of 4	0.70	Down
Virgin spermatheca	25 ± 3	3 of 4	0.25	Down
Mated spermatheca	20 ± 2	2 of 4	0.20	Down
Adult carcass	47 ± 6	2 of 4	0.50	Down
Larval CNS	148 ± 8	4 of 4	1.44	Up
Larval Salivary gland	53 ± 4	4 of 4	0.52	Down
Larval midgut	27 ± 4	0 of 4	0.26	Down
Larval tubule	61 ± 2	4 of 4	0.60	Down
Larval hindgut	50 ± 3	4 of 4	0.49	Down
Larval fat body	86 ± 31	4 of 4	0.80	None
Larval trachea	66 ± 10	4 of 4	0.64	Down
Larval carcass	45 ± 2	4 of 4	0.44	Down
S2 cells (growing)	110 ± 1	4 of 4	1.07	None
Whole fly	103 ± 2	4 of 4

Looking for FBgn0261112. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720