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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261113 through 18771 annotations produced 1 hits



CG17836 (Xrp1):

Annotation Number : CG17836
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261113
Gbrowse : chr3R:14740689-14752524 (+) // 100.0 //
Probeset : 1632712_s_at
Accessions : protein= NP_001097833; /// NP_650761; /// NP_732384; /// NP_732385; /// NP_732386;, nucleotide= NM_001104363; /// NM_142504; /// NM_169839; /// NM_169840; /// NM_169841;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0261113.
BioGrid reports that CG17836 interacts with CG17945 CG5303 CG6459 CG8159 .
TRiP has 1 RNAi stocks for FBgn0261113 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261113 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain694 ± 194 of 4 1.30Up
Head798 ± 364 of 4 1.40Up
Eye654 ± 344 of 4 1.18None
Thoracicoabdominal ganglion918 ± 54 of 4 1.70Up
Salivary gland889 ± 324 of 4 1.61Up
Crop1047 ± 394 of 4 1.90Up
Midgut1682 ± 334 of 4 3.00Up
Tubule2995 ± 2404 of 4 5.40Up
Hindgut1151 ± 74 of 4 2.10Up
Heart1334 ± 464 of 4 2.41Up
Fat body888 ± 954 of 4 1.60Up
Ovary79 ± 54 of 4 0.10Down
Testis107 ± 44 of 4 0.20Down
Male accessory glands617 ± 144 of 4 1.10None
Virgin spermatheca1080 ± 364 of 4 1.95Up
Mated spermatheca1099 ± 474 of 4 1.99Up
Adult carcass1178 ± 494 of 4 2.10Up
Larval CNS530 ± 464 of 4 0.96None
Larval Salivary gland880 ± 564 of 4 1.59Up
Larval midgut1395 ± 484 of 4 2.52Up
Larval tubule2096 ± 1074 of 4 3.80Up
Larval hindgut1290 ± 334 of 4 2.33Up
Larval fat body718 ± 614 of 4 1.30None
Larval trachea1692 ± 974 of 4 3.06Up
Larval carcass1173 ± 614 of 4 2.12Up
S2 cells (growing)1205 ± 244 of 4 2.18Up
Whole fly553 ± 254 of 4

Looking for FBgn0261113. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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