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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261119 through 18771 annotations produced 1 hits



Prp19 (Prp19):

Annotation Number : CG5519
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261119
Gbrowse : chr2R:14334859-14338545 (-) // 100.0 //
Probeset : 1622980_at
Accessions : protein= NP_523783;, nucleotide= NM_079059;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0261119.
Homophila reports that CG5519 is a close match (1e-12) to human gene BRWD3;MRX93 (NP_694984), a gene associated with Mental retardation, X-linked 93, 300659 (3).
TRiP has 1 RNAi stocks for FBgn0261119 available for purchase.
VDRC has 4 RNAi stocks for FBgn0261119 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain164 24 of 4 0.80Down
Head119 54 of 4 0.60Down
Eye87 24 of 4 0.43Down
Thoracicoabdominal ganglion151 44 of 4 0.70Down
Salivary gland147 84 of 4 0.71Down
Crop149 74 of 4 0.70Down
Midgut144 24 of 4 0.70Down
Tubule131 84 of 4 0.60Down
Hindgut127 64 of 4 0.60Down
Heart82 24 of 4 0.40Down
Fat body102 74 of 4 0.50Down
Ovary452 124 of 4 2.20Up
Testis46 24 of 4 0.20Down
Male accessory glands241 64 of 4 1.20Up
Virgin spermatheca154 74 of 4 0.75Down
Mated spermatheca177 64 of 4 0.86None
Adult carcass106 24 of 4 0.50Down
Larval CNS466 294 of 4 2.26Up
Larval Salivary gland299 124 of 4 1.45Up
Larval midgut88 54 of 4 0.43Down
Larval tubule151 74 of 4 0.70Down
Larval hindgut156 44 of 4 0.76Down
Larval fat body117 64 of 4 0.60Down
Larval trachea211 444 of 4 1.03None
Larval carcass180 104 of 4 0.88None
S2 cells (growing)389 14 of 4 1.89Up
Whole fly206 104 of 4

Looking for FBgn0261119. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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