FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261238 through 18771 annotations produced 2 hits

chr3R:2920321-2934139 (-) // 100.0 // (Alhambra):

Annotation Number : CG1070
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630415_at
Accessions : protein= , nucleotide= NP_001097697; /// NP_001097698; /// NP_001163535; /// NP_001163536; /// NP_001163537; /// NP_524250; /// NP_731131; /// NP_731132; /// NP_731133;
Pathway : "0002168 // instar larval development // inferred from mutant phenotype /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from sequence or structural similarity /// 0007482 // haltere development // inferred from ge
FlyMine data for full length.
BioGrid reports that CG1070 interacts with CG4466 CG16734 CG7146 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	221 ± 7	4 of 4	5.60	Up
Head	63 ± 4	4 of 4	1.60	Up
Eye	48 ± 2	4 of 4	1.22	None
Thoracicoabdominal ganglion	167 ± 2	4 of 4	4.30	Up
Salivary gland	49 ± 2	2 of 4	1.27	None
Crop	58 ± 2	4 of 4	1.50	Up
Midgut	40 ± 2	4 of 4	1.00	None
Tubule	21 ± 1	3 of 4	0.50	Down
Hindgut	56 ± 3	4 of 4	1.40	Up
Heart	30 ± 4	4 of 4	0.77	None
Fat body	46 ± 9	4 of 4	1.19	None
Ovary	11 ± 2	3 of 4	0.30	Down
Testis	69 ± 2	4 of 4	1.80	Up
Male accessory glands	81 ± 5	4 of 4	2.10	Up
Virgin spermatheca	38 ± 3	4 of 4	0.98	None
Mated spermatheca	35 ± 3	4 of 4	0.90	None
Adult carcass	33 ± 3	4 of 4	0.80	None
Larval CNS	168 ± 18	4 of 4	4.28	Up
Larval Salivary gland	77 ± 11	4 of 4	1.98	Up
Larval midgut	18 ± 2	4 of 4	0.47	Down
Larval tubule	58 ± 3	4 of 4	1.50	Up
Larval hindgut	45 ± 1	4 of 4	1.15	None
Larval fat body	80 ± 6	4 of 4	2.10	Up
Larval trachea	88 ± 7	4 of 4	2.24	Up
Larval carcass	81 ± 4	4 of 4	2.07	Up
S2 cells (growing)	13 ± 0	4 of 4	0.33	Down
Whole fly	39 ± 4	4 of 4

chr3R:2923389-2949907 (-) // 100.0 // (Alhambra):

Annotation Number : CG1070
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623218_s_at
Accessions : protein= , nucleotide= NP_001097697; /// NP_001097698; /// NP_001163535; /// NP_001163536; /// NP_001163537; /// NP_524250; /// NP_731131; /// NP_731132; /// NP_731133;
Pathway : "0002168 // instar larval development // inferred from mutant phenotype /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from sequence or structural similarity /// 0007482 // haltere development // inferred from ge
FlyMine data for full length.
BioGrid reports that CG1070 interacts with CG4466 CG16734 CG7146 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 1	4 of 4	0.10	Down
Head	23 ± 3	4 of 4	0.10	Down
Eye	33 ± 2	4 of 4	0.20	Down
Thoracicoabdominal ganglion	13 ± 1	2 of 4	0.10	Down
Salivary gland	16 ± 3	1 of 4	0.10	Down
Crop	24 ± 3	4 of 4	0.20	Down
Midgut	101 ± 10	4 of 4	0.60	Down
Tubule	42 ± 3	4 of 4	0.30	Down
Hindgut	53 ± 2	4 of 4	0.30	Down
Heart	29 ± 3	4 of 4	0.18	Down
Fat body	21 ± 4	4 of 4	0.13	Down
Ovary	627 ± 12	4 of 4	3.90	Up
Testis	22 ± 2	4 of 4	0.10	Down
Male accessory glands	86 ± 2	4 of 4	0.50	Down
Virgin spermatheca	20 ± 2	4 of 4	0.13	Down
Mated spermatheca	24 ± 1	4 of 4	0.15	Down
Adult carcass	25 ± 3	2 of 4	0.20	Down
Larval CNS	522 ± 32	4 of 4	3.24	Up
Larval Salivary gland	34 ± 3	4 of 4	0.21	Down
Larval midgut	46 ± 4	4 of 4	0.29	Down
Larval tubule	34 ± 4	4 of 4	0.20	Down
Larval hindgut	65 ± 1	4 of 4	0.40	Down
Larval fat body	32 ± 2	4 of 4	0.20	Down
Larval trachea	36 ± 8	4 of 4	0.23	Down
Larval carcass	46 ± 7	4 of 4	0.29	Down
S2 cells (growing)	79 ± 5	4 of 4	0.49	Down
Whole fly	161 ± 11	4 of 4

Looking for FBgn0261238. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720