FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261239 through 18771 annotations produced 4 hits

chr2L:21237236-21256186 (+) // 100.0 // (Hormone receptor-like in 39):

Annotation Number : CG8676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1628556_s_at
Accessions : protein= , nucleotide= NP_476932; /// NP_476933; /// NP_599123; /// NP_724322;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8676 is a close match (2e-14) to human gene ERBA1;THRA;THRA1 (NP_003241), a gene associated with Pituitary adenoma, nonfunctioning (3).
BioGrid reports that CG8676 interacts with CG3978 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	36 ± 1	4 of 4	0.90	None
Head	16 ± 0	4 of 4	0.40	Down
Eye	15 ± 2	4 of 4	0.38	Down
Thoracicoabdominal ganglion	34 ± 4	4 of 4	0.80	None
Salivary gland	60 ± 7	4 of 4	1.45	None
Crop	41 ± 2	4 of 4	1.00	None
Midgut	23 ± 1	4 of 4	0.60	Down
Tubule	28 ± 2	4 of 4	0.70	Down
Hindgut	30 ± 1	4 of 4	0.70	None
Heart	12 ± 0	4 of 4	0.29	Down
Fat body	10 ± 4	4 of 4	0.26	Down
Ovary	83 ± 2	4 of 4	2.00	Up
Testis	28 ± 1	4 of 4	0.70	Down
Male accessory glands	20 ± 2	3 of 4	0.50	Down
Virgin spermatheca	11 ± 1	4 of 4	0.27	Down
Mated spermatheca	13 ± 1	3 of 4	0.32	Down
Adult carcass	20 ± 4	3 of 4	0.50	Down
Larval CNS	36 ± 4	4 of 4	0.88	None
Larval Salivary gland	36 ± 3	4 of 4	0.88	None
Larval midgut	42 ± 2	4 of 4	1.02	None
Larval tubule	144 ± 7	4 of 4	3.50	Up
Larval hindgut	38 ± 1	4 of 4	0.93	None
Larval fat body	40 ± 1	4 of 4	1.00	None
Larval trachea	42 ± 6	4 of 4	1.02	None
Larval carcass	38 ± 5	4 of 4	0.92	None
S2 cells (growing)	42 ± 2	4 of 4	1.03	None
Whole fly	41 ± 3	4 of 4

chr2L:21237236-21258203 (+) // 100.0 // (Hormone receptor-like in 39):

Annotation Number : CG8676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1631402_s_at
Accessions : protein= , nucleotide= NP_476932; /// NP_476933; /// NP_599123; /// NP_724322;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8676 is a close match (2e-14) to human gene ERBA1;THRA;THRA1 (NP_003241), a gene associated with Pituitary adenoma, nonfunctioning (3).
BioGrid reports that CG8676 interacts with CG3978 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	122 ± 5	4 of 4	2.00	Up
Head	25 ± 3	4 of 4	0.40	Down
Eye	39 ± 5	4 of 4	0.66	Down
Thoracicoabdominal ganglion	90 ± 7	4 of 4	1.50	Up
Salivary gland	119 ± 24	4 of 4	1.98	None
Crop	76 ± 5	4 of 4	1.30	Up
Midgut	48 ± 2	4 of 4	0.80	Down
Tubule	113 ± 5	4 of 4	1.90	Up
Hindgut	61 ± 4	4 of 4	1.00	None
Heart	26 ± 4	4 of 4	0.45	Down
Fat body	36 ± 5	4 of 4	0.60	Down
Ovary	186 ± 3	4 of 4	3.10	Up
Testis	119 ± 5	4 of 4	2.00	Up
Male accessory glands	31 ± 1	4 of 4	0.50	Down
Virgin spermatheca	70 ± 4	4 of 4	1.17	None
Mated spermatheca	76 ± 9	4 of 4	1.26	None
Adult carcass	31 ± 2	4 of 4	0.50	Down
Larval CNS	103 ± 8	4 of 4	1.72	Up
Larval Salivary gland	91 ± 8	4 of 4	1.51	Up
Larval midgut	76 ± 2	4 of 4	1.27	Up
Larval tubule	317 ± 17	4 of 4	5.30	Up
Larval hindgut	90 ± 1	4 of 4	1.49	Up
Larval fat body	105 ± 4	4 of 4	1.70	Up
Larval trachea	125 ± 9	4 of 4	2.08	Up
Larval carcass	87 ± 9	4 of 4	1.45	None
S2 cells (growing)	62 ± 2	4 of 4	1.04	None
Whole fly	60 ± 2	4 of 4

chr2L:21237236-21259675 (+) // 100.0 // (Hormone receptor-like in 39):

Annotation Number : CG8676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630002_s_at
Accessions : protein= , nucleotide= NP_476932; /// NP_476933; /// NP_599123; /// NP_724322;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8676 is a close match (2e-14) to human gene ERBA1;THRA;THRA1 (NP_003241), a gene associated with Pituitary adenoma, nonfunctioning (3).
BioGrid reports that CG8676 interacts with CG3978 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	183 ± 9	4 of 4	5.10	Up
Head	61 ± 6	4 of 4	1.70	Up
Eye	59 ± 5	4 of 4	1.65	Up
Thoracicoabdominal ganglion	141 ± 4	4 of 4	3.90	Up
Salivary gland	249 ± 9	4 of 4	6.88	Up
Crop	124 ± 3	4 of 4	3.40	Up
Midgut	81 ± 5	4 of 4	2.30	Up
Tubule	186 ± 9	4 of 4	5.20	Up
Hindgut	99 ± 3	4 of 4	2.80	Up
Heart	32 ± 4	4 of 4	0.89	None
Fat body	39 ± 5	4 of 4	1.08	None
Ovary	16 ± 1	4 of 4	0.50	Down
Testis	10 ± 1	4 of 4	0.30	Down
Male accessory glands	50 ± 3	4 of 4	1.40	Up
Virgin spermatheca	181 ± 6	4 of 4	5.00	Up
Mated spermatheca	229 ± 21	4 of 4	6.33	Up
Adult carcass	35 ± 4	4 of 4	1.00	None
Larval CNS	248 ± 15	4 of 4	6.86	Up
Larval Salivary gland	164 ± 14	4 of 4	4.53	Up
Larval midgut	144 ± 3	4 of 4	3.98	Up
Larval tubule	467 ± 35	4 of 4	12.90	Up
Larval hindgut	178 ± 9	4 of 4	4.92	Up
Larval fat body	169 ± 17	4 of 4	4.70	Up
Larval trachea	235 ± 24	4 of 4	6.49	Up
Larval carcass	184 ± 10	4 of 4	5.09	Up
S2 cells (growing)	126 ± 3	4 of 4	3.49	Up
Whole fly	36 ± 4	4 of 4

chr2L:21237236-21256186 (+) // 100.0 // (Hormone receptor-like in 39):

Annotation Number : CG8676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632845_at
Accessions : protein= , nucleotide= NP_476932; /// NP_476933; /// NP_599123; /// NP_724322;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8676 is a close match (2e-14) to human gene ERBA1;THRA;THRA1 (NP_003241), a gene associated with Pituitary adenoma, nonfunctioning (3).
BioGrid reports that CG8676 interacts with CG3978 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	2 of 4	1.20	None
Head	1 ± 0	0 of 4	0.60	None
Eye	2 ± 0	1 of 4	0.98	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.80	None
Salivary gland	8 ± 3	1 of 4	2.98	None
Crop	9 ± 0	2 of 4	3.50	Up
Midgut	2 ± 0	0 of 4	0.80	None
Tubule	11 ± 0	3 of 4	4.00	Up
Hindgut	2 ± 0	0 of 4	0.90	None
Heart	0 ± 0	0 of 4	0.23	None
Fat body	4 ± 1	0 of 4	1.41	None
Ovary	7 ± 2	4 of 4	2.80	None
Testis	4 ± 1	2 of 4	1.60	None
Male accessory glands	2 ± 0	0 of 4	0.90	None
Virgin spermatheca	5 ± 0	1 of 4	1.85	None
Mated spermatheca	5 ± 1	1 of 4	2.00	None
Adult carcass	3 ± 0	0 of 4	1.20	None
Larval CNS	2 ± 1	2 of 4	0.87	None
Larval Salivary gland	4 ± 1	1 of 4	1.75	None
Larval midgut	2 ± 1	1 of 4	1.04	None
Larval tubule	15 ± 2	3 of 4	5.70	Up
Larval hindgut	3 ± 0	2 of 4	1.30	None
Larval fat body	8 ± 1	2 of 4	3.20	Up
Larval trachea	1 ± 1	1 of 4	0.68	None
Larval carcass	3 ± 0	1 of 4	1.10	None
S2 cells (growing)	2 ± 0	1 of 4	0.72	None
Whole fly	2 ± 1	1 of 4

Looking for FBgn0261239. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720