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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261239 through 18771 annotations produced 4 hits



chr2L:21237236-21256186 (+) // 100.0 // (Hormone receptor-like in 39):

Annotation Number : CG8676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632845_at
Accessions : protein= , nucleotide= NP_476932; /// NP_476933; /// NP_599123; /// NP_724322;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8676 is a close match (2e-14) to human gene ERBA1;THRA;THRA1 (NP_003241), a gene associated with Pituitary adenoma, nonfunctioning (3).
BioGrid reports that CG8676 interacts with CG3978 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 02 of 4 1.20None
Head1 00 of 4 0.60None
Eye2 01 of 4 0.98None
Thoracicoabdominal ganglion2 10 of 4 0.80None
Salivary gland8 31 of 4 2.98None
Crop9 02 of 4 3.50Up
Midgut2 00 of 4 0.80None
Tubule11 03 of 4 4.00Up
Hindgut2 00 of 4 0.90None
Heart0 00 of 4 0.23None
Fat body4 10 of 4 1.41None
Ovary7 24 of 4 2.80None
Testis4 12 of 4 1.60None
Male accessory glands2 00 of 4 0.90None
Virgin spermatheca5 01 of 4 1.85None
Mated spermatheca5 11 of 4 2.00None
Adult carcass3 00 of 4 1.20None
Larval CNS2 12 of 4 0.87None
Larval Salivary gland4 11 of 4 1.75None
Larval midgut2 11 of 4 1.04None
Larval tubule15 23 of 4 5.70Up
Larval hindgut3 02 of 4 1.30None
Larval fat body8 12 of 4 3.20Up
Larval trachea1 11 of 4 0.68None
Larval carcass3 01 of 4 1.10None
S2 cells (growing)2 01 of 4 0.72None
Whole fly2 11 of 4



chr2L:21237236-21259675 (+) // 100.0 // (Hormone receptor-like in 39):

Annotation Number : CG8676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630002_s_at
Accessions : protein= , nucleotide= NP_476932; /// NP_476933; /// NP_599123; /// NP_724322;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8676 is a close match (2e-14) to human gene ERBA1;THRA;THRA1 (NP_003241), a gene associated with Pituitary adenoma, nonfunctioning (3).
BioGrid reports that CG8676 interacts with CG3978 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain183 94 of 4 5.10Up
Head61 64 of 4 1.70Up
Eye59 54 of 4 1.65Up
Thoracicoabdominal ganglion141 44 of 4 3.90Up
Salivary gland249 94 of 4 6.88Up
Crop124 34 of 4 3.40Up
Midgut81 54 of 4 2.30Up
Tubule186 94 of 4 5.20Up
Hindgut99 34 of 4 2.80Up
Heart32 44 of 4 0.89None
Fat body39 54 of 4 1.08None
Ovary16 14 of 4 0.50Down
Testis10 14 of 4 0.30Down
Male accessory glands50 34 of 4 1.40Up
Virgin spermatheca181 64 of 4 5.00Up
Mated spermatheca229 214 of 4 6.33Up
Adult carcass35 44 of 4 1.00None
Larval CNS248 154 of 4 6.86Up
Larval Salivary gland164 144 of 4 4.53Up
Larval midgut144 34 of 4 3.98Up
Larval tubule467 354 of 412.90Up
Larval hindgut178 94 of 4 4.92Up
Larval fat body169 174 of 4 4.70Up
Larval trachea235 244 of 4 6.49Up
Larval carcass184 104 of 4 5.09Up
S2 cells (growing)126 34 of 4 3.49Up
Whole fly36 44 of 4



chr2L:21237236-21256186 (+) // 100.0 // (Hormone receptor-like in 39):

Annotation Number : CG8676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1628556_s_at
Accessions : protein= , nucleotide= NP_476932; /// NP_476933; /// NP_599123; /// NP_724322;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8676 is a close match (2e-14) to human gene ERBA1;THRA;THRA1 (NP_003241), a gene associated with Pituitary adenoma, nonfunctioning (3).
BioGrid reports that CG8676 interacts with CG3978 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 14 of 4 0.90None
Head16 04 of 4 0.40Down
Eye15 24 of 4 0.38Down
Thoracicoabdominal ganglion34 44 of 4 0.80None
Salivary gland60 74 of 4 1.45None
Crop41 24 of 4 1.00None
Midgut23 14 of 4 0.60Down
Tubule28 24 of 4 0.70Down
Hindgut30 14 of 4 0.70None
Heart12 04 of 4 0.29Down
Fat body10 44 of 4 0.26Down
Ovary83 24 of 4 2.00Up
Testis28 14 of 4 0.70Down
Male accessory glands20 23 of 4 0.50Down
Virgin spermatheca11 14 of 4 0.27Down
Mated spermatheca13 13 of 4 0.32Down
Adult carcass20 43 of 4 0.50Down
Larval CNS36 44 of 4 0.88None
Larval Salivary gland36 34 of 4 0.88None
Larval midgut42 24 of 4 1.02None
Larval tubule144 74 of 4 3.50Up
Larval hindgut38 14 of 4 0.93None
Larval fat body40 14 of 4 1.00None
Larval trachea42 64 of 4 1.02None
Larval carcass38 54 of 4 0.92None
S2 cells (growing)42 24 of 4 1.03None
Whole fly41 34 of 4



chr2L:21237236-21258203 (+) // 100.0 // (Hormone receptor-like in 39):

Annotation Number : CG8676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1631402_s_at
Accessions : protein= , nucleotide= NP_476932; /// NP_476933; /// NP_599123; /// NP_724322;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8676 is a close match (2e-14) to human gene ERBA1;THRA;THRA1 (NP_003241), a gene associated with Pituitary adenoma, nonfunctioning (3).
BioGrid reports that CG8676 interacts with CG3978 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 54 of 4 2.00Up
Head25 34 of 4 0.40Down
Eye39 54 of 4 0.66Down
Thoracicoabdominal ganglion90 74 of 4 1.50Up
Salivary gland119 244 of 4 1.98None
Crop76 54 of 4 1.30Up
Midgut48 24 of 4 0.80Down
Tubule113 54 of 4 1.90Up
Hindgut61 44 of 4 1.00None
Heart26 44 of 4 0.45Down
Fat body36 54 of 4 0.60Down
Ovary186 34 of 4 3.10Up
Testis119 54 of 4 2.00Up
Male accessory glands31 14 of 4 0.50Down
Virgin spermatheca70 44 of 4 1.17None
Mated spermatheca76 94 of 4 1.26None
Adult carcass31 24 of 4 0.50Down
Larval CNS103 84 of 4 1.72Up
Larval Salivary gland91 84 of 4 1.51Up
Larval midgut76 24 of 4 1.27Up
Larval tubule317 174 of 4 5.30Up
Larval hindgut90 14 of 4 1.49Up
Larval fat body105 44 of 4 1.70Up
Larval trachea125 94 of 4 2.08Up
Larval carcass87 94 of 4 1.45None
S2 cells (growing)62 24 of 4 1.04None
Whole fly60 24 of 4

Looking for FBgn0261239. 4 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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