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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261241 through 18771 annotations produced 1 hits



Vps16A (Vps16A):

Annotation Number : CG8454
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261241
Gbrowse : chr3R:5092753-5095952 (+) // 99.78 //
Probeset : 1639607_at
Accessions : protein= NP_649877;, nucleotide= NM_141620;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay
FlyMine data for FBgn0261241.
TRiP has 1 RNAi stocks for FBgn0261241 available for purchase.
VDRC has 1 RNAi stocks for FBgn0261241 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain172 ± 24 of 4 1.70Up
Head103 ± 14 of 4 1.00None
Eye122 ± 74 of 4 1.24None
Thoracicoabdominal ganglion171 ± 74 of 4 1.70Up
Salivary gland257 ± 114 of 4 2.59Up
Crop161 ± 104 of 4 1.60Up
Midgut147 ± 24 of 4 1.50Up
Tubule196 ± 24 of 4 2.00Up
Hindgut140 ± 74 of 4 1.40Up
Heart220 ± 84 of 4 2.23Up
Fat body99 ± 54 of 4 1.00None
Ovary182 ± 14 of 4 1.80Up
Testis62 ± 34 of 4 0.60Down
Male accessory glands96 ± 24 of 4 1.00None
Virgin spermatheca137 ± 24 of 4 1.39Up
Mated spermatheca124 ± 44 of 4 1.25Up
Adult carcass71 ± 44 of 4 0.70Down
Larval CNS220 ± 104 of 4 2.22Up
Larval Salivary gland202 ± 84 of 4 2.04Up
Larval midgut141 ± 24 of 4 1.42Up
Larval tubule181 ± 44 of 4 1.80Up
Larval hindgut141 ± 14 of 4 1.42Up
Larval fat body116 ± 54 of 4 1.20None
Larval trachea131 ± 94 of 4 1.32Up
Larval carcass114 ± 54 of 4 1.15None
S2 cells (growing)211 ± 24 of 4 2.13Up
Whole fly99 ± 54 of 4

Looking for FBgn0261241. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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