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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261258 through 18771 annotations produced 1 hits



lethal (3) 00534 (rgn):

Annotation Number : CG6014
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261258
Gbrowse : chr3L:21375623-21417171 (+) // 99.82 //
Probeset : 1635199_at
Accessions : protein= NP_649312;, nucleotide= NM_141055;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0261258.
VDRC has 2 RNAi stocks for FBgn0261258 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain360 ± 74 of 4 3.30Up
Head175 ± 114 of 4 1.60Up
Eye250 ± 124 of 4 2.31Up
Thoracicoabdominal ganglion357 ± 124 of 4 3.30Up
Salivary gland942 ± 284 of 4 8.69Up
Crop462 ± 124 of 4 4.30Up
Midgut101 ± 24 of 4 0.90None
Tubule324 ± 444 of 4 3.00Up
Hindgut309 ± 94 of 4 2.90Up
Heart191 ± 44 of 4 1.77Up
Fat body91 ± 84 of 4 0.84None
Ovary49 ± 14 of 4 0.50Down
Testis44 ± 14 of 4 0.40Down
Male accessory glands213 ± 54 of 4 2.00Up
Virgin spermatheca80 ± 44 of 4 0.75Down
Mated spermatheca115 ± 104 of 4 1.06None
Adult carcass131 ± 24 of 4 1.20None
Larval CNS342 ± 484 of 4 3.16Up
Larval Salivary gland33 ± 54 of 4 0.31Down
Larval midgut99 ± 44 of 4 0.92None
Larval tubule169 ± 44 of 4 1.60Up
Larval hindgut507 ± 264 of 4 4.68Up
Larval fat body37 ± 34 of 4 0.30Down
Larval trachea1213 ± 624 of 411.19Up
Larval carcass205 ± 294 of 4 1.90Up
S2 cells (growing)174 ± 254 of 4 1.61None
Whole fly108 ± 84 of 4

Looking for FBgn0261258. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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