FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261260 through 18771 annotations produced 3 hits

LDL-receptor-related protein (Megalin):

Annotation Number : CG12654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261260
Gbrowse : chrX:9276470-9278269 (-) // 100.0 //
Probeset : 1628656_at
Accessions : protein= NP_001096924; /// NP_001096926;, nucleotide= NM_001103454; /// NM_001103454; /// NM_001103456; /// NM_001103456;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 // c
FlyMine data for FBgn0261260.
TRiP has 2 RNAi stocks for FBgn0261260 available for purchase.
VDRC has 10 RNAi stocks for FBgn0261260 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	1.00	None
Head	4 ± 1	0 of 4	2.00	None
Eye	3 ± 1	0 of 4	1.62	None
Thoracicoabdominal ganglion	5 ± 1	0 of 4	2.40	None
Salivary gland	3 ± 1	0 of 4	1.81	None
Crop	5 ± 1	0 of 4	2.70	None
Midgut	1 ± 0	0 of 4	0.80	None
Tubule	5 ± 1	0 of 4	2.50	Up
Hindgut	4 ± 0	0 of 4	2.20	None
Heart	3 ± 2	1 of 4	1.79	None
Fat body	6 ± 2	0 of 4	2.98	None
Ovary	1 ± 0	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	0.50	None
Male accessory glands	4 ± 2	0 of 4	2.30	None
Virgin spermatheca	4 ± 0	0 of 4	2.26	Up
Mated spermatheca	3 ± 1	0 of 4	1.82	None
Adult carcass	8 ± 2	0 of 4	3.80	None
Larval CNS	2 ± 0	0 of 4	1.19	None
Larval Salivary gland	6 ± 2	0 of 4	2.93	None
Larval midgut	2 ± 0	0 of 4	1.17	None
Larval tubule	5 ± 2	0 of 4	2.40	None
Larval hindgut	4 ± 1	0 of 4	2.25	None
Larval fat body	3 ± 2	0 of 4	1.80	None
Larval trachea	10 ± 3	2 of 4	4.77	Up
Larval carcass	3 ± 0	0 of 4	1.50	None
S2 cells (growing)	0 ± 0	0 of 4	0.31	None
Whole fly	2 ± 0	0 of 4

LDL-receptor-related protein (Megalin):

Annotation Number : CG12139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261260
Gbrowse : chrX:9253876-9269895 (-) // 99.91 //
Probeset : 1641272_at
Accessions : protein= NP_001096924; /// NP_001096926;, nucleotide= NM_001103454; /// NM_001103454; /// NM_001103456; /// NM_001103456;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 // c
FlyMine data for FBgn0261260.
Homophila reports that CG12139 is a close match (3e-12) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
TRiP has 2 RNAi stocks for FBgn0261260 available for purchase.
VDRC has 10 RNAi stocks for FBgn0261260 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	491 ± 15	4 of 4	2.80	Up
Head	328 ± 37	4 of 4	1.90	Up
Eye	437 ± 27	4 of 4	2.50	Up
Thoracicoabdominal ganglion	635 ± 45	4 of 4	3.60	Up
Salivary gland	197 ± 56	4 of 4	1.13	None
Crop	887 ± 31	4 of 4	5.10	Up
Midgut	27 ± 2	4 of 4	0.20	Down
Tubule	40 ± 9	4 of 4	0.20	Down
Hindgut	496 ± 5	4 of 4	2.80	Up
Heart	34 ± 3	4 of 4	0.20	Down
Fat body	47 ± 10	4 of 4	0.27	Down
Ovary	129 ± 8	4 of 4	0.70	Down
Testis	269 ± 9	4 of 4	1.50	Up
Male accessory glands	1749 ± 79	4 of 4	10.00	Up
Virgin spermatheca	60 ± 6	4 of 4	0.35	Down
Mated spermatheca	90 ± 11	4 of 4	0.52	Down
Adult carcass	261 ± 57	4 of 4	1.50	None
Larval CNS	250 ± 37	4 of 4	1.43	Up
Larval Salivary gland	30 ± 2	4 of 4	0.17	Down
Larval midgut	34 ± 3	4 of 4	0.20	Down
Larval tubule	121 ± 6	4 of 4	0.70	Down
Larval hindgut	639 ± 34	4 of 4	3.66	Up
Larval fat body	16 ± 1	2 of 4	0.10	Down
Larval trachea	1192 ± 47	4 of 4	6.82	Up
Larval carcass	336 ± 13	4 of 4	1.93	Up
S2 cells (growing)	163 ± 4	4 of 4	0.93	None
Whole fly	174 ± 14	4 of 4

LDL-receptor-related protein (Megalin):

Annotation Number : CG15316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261260
Gbrowse : chrX:9315781-9394154 (-) // 99.64 //
Probeset : 1626356_s_at
Accessions : protein= NP_001096924; /// NP_001096926;, nucleotide= NM_001103454; /// NM_001103454; /// NM_001103456; /// NM_001103456;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 // c
FlyMine data for FBgn0261260.
TRiP has 2 RNAi stocks for FBgn0261260 available for purchase.
VDRC has 10 RNAi stocks for FBgn0261260 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	46 ± 5	4 of 4	9.40	Up
Head	5 ± 2	0 of 4	1.10	None
Eye	12 ± 2	4 of 4	2.57	Up
Thoracicoabdominal ganglion	30 ± 1	4 of 4	6.20	Up
Salivary gland	57 ± 9	4 of 4	11.71	Up
Crop	45 ± 3	4 of 4	9.20	Up
Midgut	9 ± 3	1 of 4	1.90	None
Tubule	16 ± 2	2 of 4	3.30	Up
Hindgut	48 ± 1	4 of 4	9.80	Up
Heart	1 ± 0	0 of 4	0.25	Down
Fat body	9 ± 6	1 of 4	1.94	None
Ovary	13 ± 0	4 of 4	2.80	Up
Testis	10 ± 0	3 of 4	2.10	Up
Male accessory glands	66 ± 7	4 of 4	13.50	Up
Virgin spermatheca	23 ± 3	4 of 4	4.83	Up
Mated spermatheca	35 ± 10	3 of 4	7.21	None
Adult carcass	25 ± 6	1 of 4	5.10	Up
Larval CNS	24 ± 3	4 of 4	5.04	Up
Larval Salivary gland	15 ± 1	2 of 4	3.17	Up
Larval midgut	11 ± 1	1 of 4	2.42	Up
Larval tubule	21 ± 1	3 of 4	4.40	Up
Larval hindgut	23 ± 5	4 of 4	4.78	Up
Larval fat body	6 ± 2	0 of 4	1.30	None
Larval trachea	49 ± 4	4 of 4	10.12	Up
Larval carcass	28 ± 3	4 of 4	5.88	Up
S2 cells (growing)	11 ± 1	3 of 4	2.25	Up
Whole fly	4 ± 0	0 of 4

Looking for FBgn0261260. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720