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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261260 through 18771 annotations produced 3 hits



LDL-receptor-related protein (Megalin):

Annotation Number : CG15316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261260
Gbrowse : chrX:9315781-9394154 (-) // 99.64 //
Probeset : 1626356_s_at
Accessions : protein= NP_001096924; /// NP_001096926;, nucleotide= NM_001103454; /// NM_001103454; /// NM_001103456; /// NM_001103456;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 // c
FlyMine data for FBgn0261260.
TRiP has 2 RNAi stocks for FBgn0261260 available for purchase.
VDRC has 10 RNAi stocks for FBgn0261260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 54 of 4 9.40Up
Head5 20 of 4 1.10None
Eye12 24 of 4 2.57Up
Thoracicoabdominal ganglion30 14 of 4 6.20Up
Salivary gland57 94 of 411.71Up
Crop45 34 of 4 9.20Up
Midgut9 31 of 4 1.90None
Tubule16 22 of 4 3.30Up
Hindgut48 14 of 4 9.80Up
Heart1 00 of 4 0.25Down
Fat body9 61 of 4 1.94None
Ovary13 04 of 4 2.80Up
Testis10 03 of 4 2.10Up
Male accessory glands66 74 of 413.50Up
Virgin spermatheca23 34 of 4 4.83Up
Mated spermatheca35 103 of 4 7.21None
Adult carcass25 61 of 4 5.10Up
Larval CNS24 34 of 4 5.04Up
Larval Salivary gland15 12 of 4 3.17Up
Larval midgut11 11 of 4 2.42Up
Larval tubule21 13 of 4 4.40Up
Larval hindgut23 54 of 4 4.78Up
Larval fat body6 20 of 4 1.30None
Larval trachea49 44 of 410.12Up
Larval carcass28 34 of 4 5.88Up
S2 cells (growing)11 13 of 4 2.25Up
Whole fly4 00 of 4



LDL-receptor-related protein (Megalin):

Annotation Number : CG12139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261260
Gbrowse : chrX:9253876-9269895 (-) // 99.91 //
Probeset : 1641272_at
Accessions : protein= NP_001096924; /// NP_001096926;, nucleotide= NM_001103454; /// NM_001103454; /// NM_001103456; /// NM_001103456;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 // c
FlyMine data for FBgn0261260.
Homophila reports that CG12139 is a close match (3e-12) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
TRiP has 2 RNAi stocks for FBgn0261260 available for purchase.
VDRC has 10 RNAi stocks for FBgn0261260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain491 154 of 4 2.80Up
Head328 374 of 4 1.90Up
Eye437 274 of 4 2.50Up
Thoracicoabdominal ganglion635 454 of 4 3.60Up
Salivary gland197 564 of 4 1.13None
Crop887 314 of 4 5.10Up
Midgut27 24 of 4 0.20Down
Tubule40 94 of 4 0.20Down
Hindgut496 54 of 4 2.80Up
Heart34 34 of 4 0.20Down
Fat body47 104 of 4 0.27Down
Ovary129 84 of 4 0.70Down
Testis269 94 of 4 1.50Up
Male accessory glands1749 794 of 410.00Up
Virgin spermatheca60 64 of 4 0.35Down
Mated spermatheca90 114 of 4 0.52Down
Adult carcass261 574 of 4 1.50None
Larval CNS250 374 of 4 1.43Up
Larval Salivary gland30 24 of 4 0.17Down
Larval midgut34 34 of 4 0.20Down
Larval tubule121 64 of 4 0.70Down
Larval hindgut639 344 of 4 3.66Up
Larval fat body16 12 of 4 0.10Down
Larval trachea1192 474 of 4 6.82Up
Larval carcass336 134 of 4 1.93Up
S2 cells (growing)163 44 of 4 0.93None
Whole fly174 144 of 4



LDL-receptor-related protein (Megalin):

Annotation Number : CG12654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261260
Gbrowse : chrX:9276470-9278269 (-) // 100.0 //
Probeset : 1628656_at
Accessions : protein= NP_001096924; /// NP_001096926;, nucleotide= NM_001103454; /// NM_001103454; /// NM_001103456; /// NM_001103456;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 // c
FlyMine data for FBgn0261260.
TRiP has 2 RNAi stocks for FBgn0261260 available for purchase.
VDRC has 10 RNAi stocks for FBgn0261260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.00None
Head4 10 of 4 2.00None
Eye3 10 of 4 1.62None
Thoracicoabdominal ganglion5 10 of 4 2.40None
Salivary gland3 10 of 4 1.81None
Crop5 10 of 4 2.70None
Midgut1 00 of 4 0.80None
Tubule5 10 of 4 2.50Up
Hindgut4 00 of 4 2.20None
Heart3 21 of 4 1.79None
Fat body6 20 of 4 2.98None
Ovary1 00 of 4 0.70None
Testis1 00 of 4 0.50None
Male accessory glands4 20 of 4 2.30None
Virgin spermatheca4 00 of 4 2.26Up
Mated spermatheca3 10 of 4 1.82None
Adult carcass8 20 of 4 3.80None
Larval CNS2 00 of 4 1.19None
Larval Salivary gland6 20 of 4 2.93None
Larval midgut2 00 of 4 1.17None
Larval tubule5 20 of 4 2.40None
Larval hindgut4 10 of 4 2.25None
Larval fat body3 20 of 4 1.80None
Larval trachea10 32 of 4 4.77Up
Larval carcass3 00 of 4 1.50None
S2 cells (growing)0 00 of 4 0.31None
Whole fly2 00 of 4

Looking for FBgn0261260. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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