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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261261 through 18771 annotations produced 2 hits



pollux (plx):

Annotation Number : CG1093
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261261
Gbrowse : chr3R:1532461-1538566 (+) // 100.0 //
Probeset : 1634208_a_at
Accessions : protein= NP_001163511; /// NP_730988; /// NP_730989;, nucleotide= NM_001170040; /// NM_169094; /// NM_169095;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assa
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005178 // integrin binding // infer
FlyMine data for FBgn0261261.
VDRC has 5 RNAi stocks for FBgn0261261 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain709 ± 214 of 4 3.80Up
Head411 ± 94 of 4 2.20Up
Eye195 ± 114 of 4 1.05None
Thoracicoabdominal ganglion625 ± 134 of 4 3.40Up
Salivary gland57 ± 64 of 4 0.31Down
Crop430 ± 74 of 4 2.30Up
Midgut8 ± 21 of 4 0.00Down
Tubule7 ± 11 of 4 0.00Down
Hindgut709 ± 64 of 4 3.80Up
Heart126 ± 124 of 4 0.68Down
Fat body29 ± 44 of 4 0.16Down
Ovary165 ± 24 of 4 0.90None
Testis21 ± 14 of 4 0.10Down
Male accessory glands99 ± 104 of 4 0.50Down
Virgin spermatheca28 ± 34 of 4 0.15Down
Mated spermatheca34 ± 04 of 4 0.18Down
Adult carcass499 ± 234 of 4 2.70Up
Larval CNS548 ± 264 of 4 2.95Up
Larval Salivary gland6 ± 01 of 4 0.03Down
Larval midgut15 ± 34 of 4 0.08Down
Larval tubule7 ± 11 of 4 0.00Down
Larval hindgut318 ± 204 of 4 1.71Up
Larval fat body38 ± 24 of 4 0.20Down
Larval trachea142 ± 114 of 4 0.77Down
Larval carcass505 ± 414 of 4 2.72Up
S2 cells (growing)96 ± 24 of 4 0.52Down
Whole fly186 ± 144 of 4



pollux (plx):

Annotation Number : CG14674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261261
Gbrowse : chr3R:1522503-1525727 (+) // 100.0 //
Probeset : 1624025_at
Accessions : protein= NP_001163511; /// NP_730988; /// NP_730989;, nucleotide= NM_001170040; /// NM_169094; /// NM_169095;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assa
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005178 // integrin binding // infer
FlyMine data for FBgn0261261.
VDRC has 5 RNAi stocks for FBgn0261261 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 2.70None
Head0 ± 00 of 4 1.90None
Eye0 ± 00 of 4 1.00None
Thoracicoabdominal ganglion0 ± 00 of 4 2.10None
Salivary gland1 ± 00 of 4 3.22None
Crop1 ± 00 of 4 3.30None
Midgut0 ± 00 of 4 1.90Up
Tubule1 ± 00 of 4 2.40None
Hindgut0 ± 00 of 4 1.20None
Heart0 ± 00 of 4 0.72None
Fat body0 ± 00 of 4 0.94None
Ovary0 ± 00 of 4 1.00None
Testis0 ± 00 of 4 1.10None
Male accessory glands0 ± 00 of 4 1.60Up
Virgin spermatheca0 ± 00 of 4 1.28None
Mated spermatheca0 ± 00 of 4 1.28None
Adult carcass1 ± 00 of 4 2.40None
Larval CNS0 ± 00 of 4 0.61None
Larval Salivary gland0 ± 00 of 4 1.17None
Larval midgut0 ± 00 of 4 1.44None
Larval tubule0 ± 00 of 4 1.20None
Larval hindgut0 ± 00 of 4 0.72None
Larval fat body1 ± 00 of 4 2.10None
Larval trachea0 ± 00 of 4 0.61None
Larval carcass0 ± 00 of 4 1.50None
S2 cells (growing)0 ± 00 of 4 2.17Up
Whole fly0 ± 00 of 4

Looking for FBgn0261261. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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