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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0261262 through 18771 annotations produced 1 hits

CG31149 (CG42613):

Annotation Number : CG31149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261262
Gbrowse : chr3R:14794217-14802160 (+) // 100.0 //
Probeset : 1630366_at
Accessions : protein= NP_732390;, nucleotide= NM_169844;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0261262.
Homophila reports that CG31149 is a close match (4e-13) to human gene MTSP1;ST14 (NP_068813), a gene associated with Ichthyosis with hypotrichosis, 610765 (3).
BioGrid reports that CG31149 interacts with CG9324 .
VDRC has 5 RNAi stocks for FBgn0261262 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1256 384 of 435.40Up
Head321 144 of 4 9.00Up
Eye119 134 of 4 3.35Up
Thoracicoabdominal ganglion1263 574 of 435.60Up
Salivary gland5 20 of 4 0.16Down
Crop94 74 of 4 2.70Up
Midgut8 00 of 4 0.20Down
Tubule6 02 of 4 0.20Down
Hindgut3 00 of 4 0.10Down
Heart108 114 of 4 3.05Up
Fat body14 53 of 4 0.40Down
Ovary1 00 of 4 0.00Down
Testis31 44 of 4 0.90None
Male accessory glands24 24 of 4 0.70None
Virgin spermatheca11 12 of 4 0.31Down
Mated spermatheca8 32 of 4 0.24Down
Adult carcass13 41 of 4 0.40Down
Larval CNS186 324 of 4 5.25Up
Larval Salivary gland5 01 of 4 0.16Down
Larval midgut8 03 of 4 0.24Down
Larval tubule3 02 of 4 0.10Down
Larval hindgut4 21 of 4 0.14Down
Larval fat body5 10 of 4 0.20Down
Larval trachea5 31 of 4 0.14Down
Larval carcass2 00 of 4 0.08Down
S2 cells (growing)3 00 of 4 0.09Down
Whole fly35 34 of 4

Looking for FBgn0261262. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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