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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261269 through 18771 annotations produced 1 hits



convoluted (conv):

Annotation Number : CG8561
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261269
Gbrowse : chr2R:10159104-10162377 (+) // 100.0 //
Probeset : 1629638_at
Accessions : protein= NP_610948;, nucleotide= NM_137104;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035159 // regulation of tube length
Interpro : open tracheal system // inferred from mutant phenotype"
FlyMine data for FBgn0261269.
Homophila reports that CG8561 is a close match (3e-11) to human gene ARMD10;TLR4 (NP_612564), a gene associated with Endotoxin hyporesponsiveness (3);{Colorectal cancer, susceptibility to}, 114500 (3);{Longevity, susceptibility to}, 152430 (3);{Macular degeneration, age-related, 10}, 611488 (3).
TRiP has 1 RNAi stocks for FBgn0261269 available for purchase.
VDRC has 1 RNAi stocks for FBgn0261269 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.50None
Head15 ± 24 of 4 1.60None
Eye7 ± 11 of 4 0.85None
Thoracicoabdominal ganglion5 ± 21 of 4 0.60None
Salivary gland8 ± 30 of 4 0.87None
Crop36 ± 14 of 4 4.00Up
Midgut4 ± 20 of 4 0.50None
Tubule2 ± 00 of 4 0.30Down
Hindgut26 ± 34 of 4 2.80Up
Heart3 ± 11 of 4 0.36None
Fat body6 ± 32 of 4 0.65None
Ovary2 ± 10 of 4 0.30None
Testis24 ± 14 of 4 2.60Up
Male accessory glands4 ± 10 of 4 0.50None
Virgin spermatheca6 ± 10 of 4 0.69None
Mated spermatheca7 ± 12 of 4 0.84None
Adult carcass21 ± 44 of 4 2.30None
Larval CNS37 ± 34 of 4 4.01Up
Larval Salivary gland9 ± 21 of 4 0.97None
Larval midgut7 ± 20 of 4 0.76None
Larval tubule5 ± 00 of 4 0.60None
Larval hindgut123 ± 54 of 413.28Up
Larval fat body7 ± 31 of 4 0.80None
Larval trachea251 ± 164 of 427.09Up
Larval carcass184 ± 34 of 419.85Up
S2 cells (growing)9 ± 03 of 4 0.98None
Whole fly9 ± 22 of 4

Looking for FBgn0261269. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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