Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
About & FAQ
Top 50
Original data
Interesting meta-analysis

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0261277 through 18771 annotations produced 1 hits

retroactive (rtv):

Annotation Number : CG1397
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261277
Gbrowse : chrX:11046505-11047812 (-) // 100.0 //
Probeset : 1641039_at
Accessions : protein= NP_572693;, nucleotide= NM_132465;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035158 // regulation of tube diameter
Interpro : open tracheal system // inferred from mutant phenotype"
FlyMine data for FBgn0261277.
VDRC has 1 RNAi stocks for FBgn0261277 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.50Down
Head32 44 of 4 3.00Up
Eye58 54 of 4 5.41Up
Thoracicoabdominal ganglion6 11 of 4 0.60None
Salivary gland8 20 of 4 0.83None
Crop91 04 of 4 8.50Up
Midgut13 20 of 4 1.30None
Tubule3 00 of 4 0.30Down
Hindgut63 14 of 4 5.90Up
Heart6 10 of 4 0.59None
Fat body11 82 of 4 1.07None
Ovary2 00 of 4 0.20Down
Testis2 00 of 4 0.20Down
Male accessory glands3 20 of 4 0.40Down
Virgin spermatheca11 12 of 4 1.03None
Mated spermatheca12 23 of 4 1.20None
Adult carcass22 44 of 4 2.10None
Larval CNS54 114 of 4 5.10Up
Larval Salivary gland10 11 of 4 1.00None
Larval midgut13 10 of 4 1.22None
Larval tubule2 10 of 4 0.30Down
Larval hindgut103 74 of 4 9.65Up
Larval fat body4 10 of 4 0.40Down
Larval trachea393 424 of 436.68Up
Larval carcass136 84 of 412.73Up
S2 cells (growing)4 11 of 4 0.41Down
Whole fly10 04 of 4

Looking for FBgn0261277. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime