FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261278 through 18771 annotations produced 3 hits

grapes (grp):

Annotation Number : CG17161
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261278
Gbrowse : chr2L:16680087-16699926 (+) // 100.0 //
Probeset : 1634230_s_at
Accessions : protein= NP_477011; /// NP_723985; /// NP_723986; /// NP_723987;, nucleotide= NM_057663; /// NM_165171; /// NM_165172; /// NM_165173;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00431
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0261278.
Homophila reports that CG17161 is a close match (6e-11) to human gene SCA11;TTBK2 (NP_775771), a gene associated with Spinocerebellar ataxia-11, 604432 (3).
BioGrid reports that CG17161 interacts with CG17765 CG30147 CG4641 CG2174 CG31534 CG4087 CG7001 CG7813 CG4252 CG5825 CG10616 CG13510 CG3018 CG15006 CG17508 CG5708 CG11182 CG9193 CG31000 CG5731 CG31679 CG12723 CG31811 CG6811 CG8667 CG9930 CG15112 CG4184 CG17964 CG8181 Dmel CG17162 .
TRiP has 3 RNAi stocks for FBgn0261278 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261278 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	724 ± 13	4 of 4	0.70	Down
Head	240 ± 16	4 of 4	0.20	Down
Eye	101 ± 10	4 of 4	0.09	Down
Thoracicoabdominal ganglion	684 ± 6	4 of 4	0.60	Down
Salivary gland	180 ± 12	4 of 4	0.17	Down
Crop	197 ± 8	4 of 4	0.20	Down
Midgut	146 ± 11	4 of 4	0.10	Down
Tubule	253 ± 37	4 of 4	0.20	Down
Hindgut	143 ± 4	4 of 4	0.10	Down
Heart	62 ± 2	4 of 4	0.06	Down
Fat body	66 ± 12	4 of 4	0.06	Down
Ovary	2137 ± 48	4 of 4	2.00	Up
Testis	217 ± 12	4 of 4	0.20	Down
Male accessory glands	84 ± 8	4 of 4	0.10	Down
Virgin spermatheca	138 ± 2	4 of 4	0.13	Down
Mated spermatheca	160 ± 10	4 of 4	0.15	Down
Adult carcass	80 ± 19	4 of 4	0.10	Down
Larval CNS	1280 ± 18	4 of 4	1.20	Up
Larval Salivary gland	569 ± 11	4 of 4	0.53	Down
Larval midgut	215 ± 14	4 of 4	0.20	Down
Larval tubule	498 ± 22	4 of 4	0.50	Down
Larval hindgut	398 ± 23	4 of 4	0.37	Down
Larval fat body	158 ± 17	4 of 4	0.10	Down
Larval trachea	480 ± 87	4 of 4	0.45	Down
Larval carcass	329 ± 22	4 of 4	0.31	Down
S2 cells (growing)	510 ± 8	4 of 4	0.48	Down
Whole fly	1069 ± 61	4 of 4

grapes (grp):

Annotation Number : HDC02847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261278
Gbrowse : chr2L:16685836-16687059 (+) // 100.0 //
Probeset : 1625416_x_at
Accessions : protein= NP_477011; /// NP_723985; /// NP_723986; /// NP_723987;, nucleotide= NM_057663; /// NM_165171; /// NM_165172; /// NM_165173;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00431
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0261278.
TRiP has 3 RNAi stocks for FBgn0261278 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261278 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	30 ± 2	4 of 4	1.90	Up
Head	9 ± 1	2 of 4	0.60	Down
Eye	3 ± 0	0 of 4	0.25	Down
Thoracicoabdominal ganglion	18 ± 2	3 of 4	1.10	None
Salivary gland	21 ± 5	1 of 4	1.32	None
Crop	15 ± 4	0 of 4	1.00	None
Midgut	16 ± 2	0 of 4	1.00	None
Tubule	12 ± 0	3 of 4	0.80	Down
Hindgut	17 ± 3	3 of 4	1.10	None
Heart	5 ± 0	1 of 4	0.33	Down
Fat body	17 ± 4	4 of 4	1.07	None
Ovary	9 ± 1	3 of 4	0.60	Down
Testis	10 ± 0	4 of 4	0.60	Down
Male accessory glands	21 ± 1	3 of 4	1.40	None
Virgin spermatheca	22 ± 5	3 of 4	1.39	None
Mated spermatheca	20 ± 6	3 of 4	1.27	None
Adult carcass	17 ± 5	2 of 4	1.10	None
Larval CNS	30 ± 5	4 of 4	1.90	Up
Larval Salivary gland	14 ± 1	2 of 4	0.91	None
Larval midgut	18 ± 4	3 of 4	1.16	None
Larval tubule	16 ± 3	4 of 4	1.00	None
Larval hindgut	12 ± 1	1 of 4	0.80	None
Larval fat body	14 ± 1	1 of 4	0.90	None
Larval trachea	10 ± 6	2 of 4	0.66	None
Larval carcass	16 ± 3	0 of 4	1.03	None
S2 cells (growing)	10 ± 1	2 of 4	0.64	Down
Whole fly	16 ± 0	4 of 4

grapes (grp):

Annotation Number : HDC02847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261278
Gbrowse : chr2L:16685836-16687059 (+) // 100.0 //
Probeset : 1629880_at
Accessions : protein= NP_477011; /// NP_723985; /// NP_723986; /// NP_723987;, nucleotide= NM_057663; /// NM_165171; /// NM_165172; /// NM_165173;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00431
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0261278.
TRiP has 3 RNAi stocks for FBgn0261278 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261278 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	29 ± 2	4 of 4	2.30	Up
Head	10 ± 1	3 of 4	0.80	None
Eye	6 ± 1	2 of 4	0.50	Down
Thoracicoabdominal ganglion	22 ± 3	1 of 4	1.80	Up
Salivary gland	10 ± 1	0 of 4	0.85	None
Crop	21 ± 3	2 of 4	1.70	None
Midgut	23 ± 2	0 of 4	1.80	Up
Tubule	17 ± 0	3 of 4	1.30	Up
Hindgut	18 ± 1	4 of 4	1.40	None
Heart	8 ± 0	3 of 4	0.70	Down
Fat body	23 ± 9	3 of 4	1.81	None
Ovary	7 ± 1	0 of 4	0.60	Down
Testis	8 ± 1	1 of 4	0.70	None
Male accessory glands	18 ± 4	3 of 4	1.50	None
Virgin spermatheca	26 ± 0	4 of 4	2.06	Up
Mated spermatheca	30 ± 8	4 of 4	2.36	None
Adult carcass	19 ± 1	0 of 4	1.50	Up
Larval CNS	33 ± 7	4 of 4	2.62	Up
Larval Salivary gland	16 ± 1	2 of 4	1.31	None
Larval midgut	20 ± 2	0 of 4	1.59	Up
Larval tubule	14 ± 2	3 of 4	1.10	None
Larval hindgut	14 ± 2	2 of 4	1.11	None
Larval fat body	13 ± 1	0 of 4	1.10	None
Larval trachea	13 ± 8	3 of 4	1.07	None
Larval carcass	12 ± 1	1 of 4	1.01	None
S2 cells (growing)	10 ± 1	0 of 4	0.80	None
Whole fly	12 ± 0	1 of 4

Looking for FBgn0261278. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720