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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261279 through 18771 annotations produced 2 hits



liquid facets-Related (lqfR):

Annotation Number : CG31170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261279
Gbrowse : chr3R:18237054-18244778 (+) // 100.0 //
Probeset : 1636557_a_at
Accessions : protein= NP_732734; /// NP_732736;, nucleotide= NM_170009; /// NM_170011; /// NM_170011;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay
FlyMine data for FBgn0261279.
BioGrid reports that CG31170 interacts with CG8965 CG3217 CG3937 CG5183 CG7021 CG8507 CG9414 .
TRiP has 2 RNAi stocks for FBgn0261279 available for purchase.
VDRC has 4 RNAi stocks for FBgn0261279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain377 ± 84 of 4 1.30Up
Head252 ± 44 of 4 0.90Down
Eye257 ± 54 of 4 0.87Down
Thoracicoabdominal ganglion383 ± 114 of 4 1.30Up
Salivary gland1129 ± 324 of 4 3.84Up
Crop421 ± 104 of 4 1.40Up
Midgut549 ± 174 of 4 1.90Up
Tubule294 ± 134 of 4 1.00None
Hindgut331 ± 194 of 4 1.10None
Heart133 ± 54 of 4 0.45Down
Fat body306 ± 254 of 4 1.04None
Ovary486 ± 134 of 4 1.70Up
Testis487 ± 94 of 4 1.70Up
Male accessory glands506 ± 224 of 4 1.70Up
Virgin spermatheca242 ± 94 of 4 0.82Down
Mated spermatheca281 ± 154 of 4 0.96None
Adult carcass230 ± 114 of 4 0.80Down
Larval CNS236 ± 64 of 4 0.80Down
Larval Salivary gland3361 ± 1394 of 411.42Up
Larval midgut618 ± 104 of 4 2.10Up
Larval tubule583 ± 144 of 4 2.00Up
Larval hindgut639 ± 124 of 4 2.17Up
Larval fat body306 ± 194 of 4 1.00None
Larval trachea259 ± 294 of 4 0.88None
Larval carcass368 ± 144 of 4 1.25Up
S2 cells (growing)219 ± 34 of 4 0.75Down
Whole fly294 ± 84 of 4



liquid facets-Related (lqfR):

Annotation Number : CG31285
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261279
Gbrowse : chr3R:18240264-18243032 (+) // 100.0 //
Probeset : 1639568_at
Accessions : protein= NP_732734; /// NP_732736;, nucleotide= NM_170009; /// NM_170011; /// NM_170011;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay
FlyMine data for FBgn0261279.
TRiP has 2 RNAi stocks for FBgn0261279 available for purchase.
VDRC has 4 RNAi stocks for FBgn0261279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 0.50Down
Head6 ± 20 of 4 0.30Down
Eye7 ± 10 of 4 0.28Down
Thoracicoabdominal ganglion12 ± 11 of 4 0.50Down
Salivary gland22 ± 20 of 4 0.85None
Crop15 ± 11 of 4 0.60Down
Midgut8 ± 11 of 4 0.30Down
Tubule15 ± 11 of 4 0.60Down
Hindgut12 ± 12 of 4 0.50Down
Heart3 ± 20 of 4 0.13Down
Fat body13 ± 30 of 4 0.51Down
Ovary66 ± 04 of 4 2.50Up
Testis11 ± 13 of 4 0.40Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca6 ± 10 of 4 0.25Down
Mated spermatheca7 ± 10 of 4 0.28Down
Adult carcass13 ± 40 of 4 0.50None
Larval CNS31 ± 54 of 4 1.17None
Larval Salivary gland88 ± 74 of 4 3.31Up
Larval midgut7 ± 10 of 4 0.26Down
Larval tubule7 ± 10 of 4 0.30Down
Larval hindgut10 ± 10 of 4 0.39Down
Larval fat body9 ± 30 of 4 0.40Down
Larval trachea8 ± 43 of 4 0.32Down
Larval carcass11 ± 32 of 4 0.42Down
S2 cells (growing)30 ± 24 of 4 1.13None
Whole fly26 ± 34 of 4

Looking for FBgn0261279. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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