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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261283 through 18771 annotations produced 1 hits



Sterol regulatory element-binding protein (HLH106):

Annotation Number : CG8522
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261283
Gbrowse : chr3L:19787043-19792086 (+) // 100.0 //
Probeset : 1628292_s_at
Accessions : protein= NP_524166; /// NP_730449; /// NP_730450;, nucleotide= NM_079442; /// NM_168815; /// NM_168816;
Pathway : engulfment // inferred from mutant phenotype /// 0042304 // regulation of fatty acid biosynthetic process // traceable
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0261283.
TRiP has 2 RNAi stocks for FBgn0261283 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261283 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain314 ± 44 of 4 1.50Up
Head328 ± 164 of 4 1.50Up
Eye541 ± 264 of 4 2.51Up
Thoracicoabdominal ganglion388 ± 44 of 4 1.80Up
Salivary gland204 ± 254 of 4 0.95None
Crop610 ± 194 of 4 2.80Up
Midgut270 ± 144 of 4 1.20Up
Tubule247 ± 184 of 4 1.10None
Hindgut369 ± 74 of 4 1.70Up
Heart729 ± 134 of 4 3.38Up
Fat body595 ± 554 of 4 2.76Up
Ovary221 ± 34 of 4 1.00None
Testis60 ± 14 of 4 0.30Down
Male accessory glands375 ± 174 of 4 1.70Up
Virgin spermatheca669 ± 474 of 4 3.10Up
Mated spermatheca452 ± 174 of 4 2.09Up
Adult carcass527 ± 304 of 4 2.40Up
Larval CNS306 ± 254 of 4 1.42Up
Larval Salivary gland227 ± 144 of 4 1.05None
Larval midgut239 ± 84 of 4 1.11None
Larval tubule160 ± 124 of 4 0.70Down
Larval hindgut231 ± 124 of 4 1.07None
Larval fat body157 ± 164 of 4 0.70Down
Larval trachea283 ± 244 of 4 1.31Up
Larval carcass269 ± 94 of 4 1.25Up
S2 cells (growing)1607 ± 434 of 4 7.44Up
Whole fly216 ± 104 of 4

Looking for FBgn0261283. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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