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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261285 through 18771 annotations produced 2 hits



Phosphopantothenoylcysteine synthetase (Ppcs):

Annotation Number : CG5629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261285
Gbrowse : chr3R:14966710-14973629 (-) // 100.0 //
Probeset : 1624604_a_at
Accessions : protein= NP_650784; /// NP_732401;, nucleotide= NM_142527; /// NM_169848;
Pathway : nurse cell to oocyte // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // infer
FlyMine data for FBgn0261285.
TRiP has 1 RNAi stocks for FBgn0261285 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261285 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 ± 34 of 4 1.10None
Head27 ± 74 of 4 0.40Down
Eye11 ± 12 of 4 0.18Down
Thoracicoabdominal ganglion26 ± 53 of 4 0.40Down
Salivary gland80 ± 30 of 4 1.24Up
Crop26 ± 54 of 4 0.40Down
Midgut76 ± 34 of 4 1.20Up
Tubule81 ± 64 of 4 1.20Up
Hindgut62 ± 44 of 4 1.00None
Heart24 ± 14 of 4 0.38Down
Fat body36 ± 24 of 4 0.56Down
Ovary158 ± 54 of 4 2.40Up
Testis31 ± 34 of 4 0.50Down
Male accessory glands43 ± 44 of 4 0.70Down
Virgin spermatheca26 ± 11 of 4 0.41Down
Mated spermatheca26 ± 32 of 4 0.40Down
Adult carcass37 ± 13 of 4 0.60Down
Larval CNS19 ± 34 of 4 0.30Down
Larval Salivary gland37 ± 54 of 4 0.58Down
Larval midgut87 ± 34 of 4 1.34Up
Larval tubule46 ± 34 of 4 0.70Down
Larval hindgut43 ± 24 of 4 0.67Down
Larval fat body30 ± 21 of 4 0.50Down
Larval trachea11 ± 30 of 4 0.18Down
Larval carcass31 ± 04 of 4 0.49Down
S2 cells (growing)72 ± 34 of 4 1.12None
Whole fly64 ± 24 of 4



Phosphopantothenoylcysteine synthetase (Ppcs):

Annotation Number : CG5629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261285
Gbrowse : chr3R:14964787-14973629 (-) // 100.0 //
Probeset : 1624807_at
Accessions : protein= NP_650784; /// NP_732401;, nucleotide= NM_142527; /// NM_169848;
Pathway : nurse cell to oocyte // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // infer
FlyMine data for FBgn0261285.
TRiP has 1 RNAi stocks for FBgn0261285 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261285 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain695 ± 354 of 412.40Up
Head196 ± 84 of 4 3.50Up
Eye151 ± 294 of 4 2.72Up
Thoracicoabdominal ganglion298 ± 184 of 4 5.30Up
Salivary gland151 ± 214 of 4 2.70Up
Crop129 ± 64 of 4 2.30Up
Midgut125 ± 74 of 4 2.20Up
Tubule71 ± 34 of 4 1.30Up
Hindgut292 ± 134 of 4 5.20Up
Heart181 ± 224 of 4 3.25Up
Fat body185 ± 164 of 4 3.32Up
Ovary24 ± 24 of 4 0.40Down
Testis25 ± 14 of 4 0.40Down
Male accessory glands60 ± 14 of 4 1.10None
Virgin spermatheca88 ± 44 of 4 1.58Up
Mated spermatheca88 ± 24 of 4 1.57Up
Adult carcass83 ± 44 of 4 1.50Up
Larval CNS290 ± 254 of 4 5.20Up
Larval Salivary gland50 ± 34 of 4 0.90None
Larval midgut94 ± 64 of 4 1.69Up
Larval tubule78 ± 34 of 4 1.40Up
Larval hindgut96 ± 64 of 4 1.72Up
Larval fat body67 ± 74 of 4 1.20None
Larval trachea115 ± 234 of 4 2.07Up
Larval carcass73 ± 34 of 4 1.32Up
S2 cells (growing)191 ± 74 of 4 3.43Up
Whole fly55 ± 34 of 4

Looking for FBgn0261285. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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