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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261341 through 18771 annotations produced 1 hits



helmsman (verm):

Annotation Number : CG8756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261341
Gbrowse : chr3L:19683605-19688331 (-) // 100.0 //
Probeset : 1624035_a_at
Accessions : protein= NP_001163469; /// NP_001163470; /// NP_649142; /// NP_730441; /// NP_730442; /// NP_730443;, nucleotide= NM_001169998; /// NM_001169999; /// NM_140885; /// NM_168808; /// NM_168809; /// NM_168810;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035159 // regulation of tube length
Interpro : open tracheal system // inferred from mutant phenotype /// 0060439 // trachea morphogenesis // inferred from mutant phe
FlyMine data for FBgn0261341.
VDRC has 4 RNAi stocks for FBgn0261341 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head24 ± 90 of 4 1.00None
Eye24 ± 34 of 4 0.97None
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.19Down
Crop37 ± 90 of 4 1.50None
Midgut3 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut13 ± 30 of 4 0.60None
Heart8 ± 30 of 4 0.33None
Fat body2 ± 00 of 4 0.09Down
Ovary2 ± 00 of 4 0.10Down
Testis26 ± 00 of 4 1.00None
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.08Down
Mated spermatheca3 ± 00 of 4 0.12Down
Adult carcass65 ± 40 of 4 2.60Up
Larval CNS14 ± 70 of 4 0.56None
Larval Salivary gland39 ± 20 of 4 1.59None
Larval midgut18 ± 30 of 4 0.73None
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1039 ± 404 of 441.40Up
Larval fat body9 ± 20 of 4 0.40None
Larval trachea1365 ± 2164 of 454.40Up
Larval carcass2323 ± 2134 of 492.56Up
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly25 ± 60 of 4

Looking for FBgn0261341. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime