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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261381 through 18771 annotations produced 1 hits



/// Mitochondrial Transcription Factor B1 (CG42630 /// mtTFB1):

Annotation Number : CG7319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261353 /// FBgn0261381
Gbrowse : chr3L:11702029-11703671 (+) // 100.0 //
Probeset : 1637555_at
Accessions : protein= NP_648499; /// NP_996062;, nucleotide= NM_140242; /// NM_206340;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotati
Interpro : "0000179 // rRNA (adenine-N6
FlyMine data for FBgn0261353 /// FBgn0261381.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain470 134 of 4 1.20Up
Head375 94 of 4 1.00None
Eye295 194 of 4 0.76Down
Thoracicoabdominal ganglion480 164 of 4 1.20Up
Salivary gland441 274 of 4 1.13None
Crop343 124 of 4 0.90None
Midgut376 84 of 4 1.00None
Tubule727 204 of 4 1.90Up
Hindgut519 124 of 4 1.30Up
Heart360 264 of 4 0.92None
Fat body323 504 of 4 0.83None
Ovary463 164 of 4 1.20Up
Testis409 204 of 4 1.00None
Male accessory glands452 294 of 4 1.20None
Virgin spermatheca409 144 of 4 1.05None
Mated spermatheca452 254 of 4 1.16None
Adult carcass458 194 of 4 1.20Up
Larval CNS451 464 of 4 1.16None
Larval Salivary gland522 144 of 4 1.34Up
Larval midgut381 274 of 4 0.98None
Larval tubule281 94 of 4 0.70Down
Larval hindgut565 284 of 4 1.45Up
Larval fat body181 144 of 4 0.50Down
Larval trachea373 114 of 4 0.96None
Larval carcass513 244 of 4 1.31Up
S2 cells (growing)865 54 of 4 2.22Up
Whole fly390 194 of 4

Looking for FBgn0261381. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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