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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261383 through 18771 annotations produced 1 hits



/// lethal (1) G0060 (CG3125 /// l(1)G0060):

Annotation Number : CG3125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261383
Gbrowse : chrX:5632693-5641257 (-) // 100.0 //
Probeset : 1628824_s_at
Accessions : protein= NP_572253; /// NP_727026;, nucleotide= NM_132025; /// NM_167047;
FlyMine data for FBgn0261383.
VDRC has 1 RNAi stocks for FBgn0261383 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain138 ± 44 of 4 1.60Up
Head68 ± 24 of 4 0.80Down
Eye49 ± 34 of 4 0.56Down
Thoracicoabdominal ganglion88 ± 04 of 4 1.00None
Salivary gland116 ± 84 of 4 1.31Up
Crop103 ± 44 of 4 1.20None
Midgut65 ± 104 of 4 0.70None
Tubule49 ± 24 of 4 0.60Down
Hindgut81 ± 44 of 4 0.90None
Heart70 ± 104 of 4 0.80None
Fat body122 ± 64 of 4 1.38Up
Ovary195 ± 34 of 4 2.20Up
Testis12 ± 14 of 4 0.10Down
Male accessory glands150 ± 64 of 4 1.70Up
Virgin spermatheca125 ± 134 of 4 1.42None
Mated spermatheca108 ± 64 of 4 1.23None
Adult carcass58 ± 14 of 4 0.70Down
Larval CNS175 ± 204 of 4 1.99Up
Larval Salivary gland120 ± 104 of 4 1.36Up
Larval midgut70 ± 34 of 4 0.80None
Larval tubule95 ± 14 of 4 1.10None
Larval hindgut89 ± 34 of 4 1.01None
Larval fat body80 ± 54 of 4 0.90None
Larval trachea76 ± 54 of 4 0.87None
Larval carcass65 ± 64 of 4 0.74Down
S2 cells (growing)85 ± 74 of 4 0.96None
Whole fly88 ± 64 of 4

Looking for FBgn0261383. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime