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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261393 through 18771 annotations produced 1 hits



fragment D (alpha-Est5):

Annotation Number : CG1089
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261393
Gbrowse : chr3R:3359947-3362247 (-) // 100.0 //
Probeset : 1641650_at
Accessions : protein= NP_524265;, nucleotide= NM_079541;
Interpro : 0004091 // carboxylesterase activity // inferred from direct assay /// 0004091 // carboxylesterase activity // inferred
FlyMine data for FBgn0261393.
Homophila reports that CG1089 is a close match (1e-13) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
VDRC has 2 RNAi stocks for FBgn0261393 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head72 ± 134 of 4 0.70None
Eye23 ± 54 of 4 0.24Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland37 ± 04 of 4 0.38Down
Crop14 ± 10 of 4 0.10Down
Midgut718 ± 154 of 4 7.40Up
Tubule248 ± 214 of 4 2.60Up
Hindgut117 ± 64 of 4 1.20None
Heart77 ± 44 of 4 0.80None
Fat body195 ± 194 of 4 2.01Up
Ovary104 ± 84 of 4 1.10None
Testis64 ± 44 of 4 0.70Down
Male accessory glands3 ± 00 of 4 0.00Down
Virgin spermatheca91 ± 34 of 4 0.94None
Mated spermatheca75 ± 64 of 4 0.78None
Adult carcass98 ± 134 of 4 1.00None
Larval CNS8 ± 21 of 4 0.09Down
Larval Salivary gland65 ± 44 of 4 0.67Down
Larval midgut630 ± 254 of 4 6.49Up
Larval tubule213 ± 154 of 4 2.20Up
Larval hindgut385 ± 144 of 4 3.96Up
Larval fat body139 ± 234 of 4 1.40None
Larval trachea51 ± 144 of 4 0.53Down
Larval carcass94 ± 94 of 4 0.97None
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly97 ± 64 of 4

Looking for FBgn0261393. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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