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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261394 through 18771 annotations produced 1 hits



Proteasome 20S alpha3 subunit (Pros29):

Annotation Number : CG9327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261394
Gbrowse : chr2R:16882406-16883623 (+) // 100.0 //
Probeset : 1634820_at
Accessions : protein= NP_476691;, nucleotide= NM_057343;
Pathway : "0000502 // proteasome complex // non-traceable author statement /// 0000502 // proteasome complex // inferred from elec
Interpro : alpha-subunit complex // inferred from electronic annotation"
FlyMine data for FBgn0261394.
Homophila reports that CG9327 is a close match (1e-30) to human gene P27K;PROS27;PSMA6 (NP_002782), a gene associated with {Myocardial infarcation, susceptibility to} (3).
VDRC has 1 RNAi stocks for FBgn0261394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain250 ± 44 of 4 0.40Down
Head398 ± 174 of 4 0.60Down
Eye454 ± 184 of 4 0.64Down
Thoracicoabdominal ganglion268 ± 84 of 4 0.40Down
Salivary gland443 ± 204 of 4 0.63Down
Crop704 ± 134 of 4 1.00None
Midgut681 ± 204 of 4 1.00None
Tubule330 ± 204 of 4 0.50Down
Hindgut503 ± 44 of 4 0.70Down
Heart1445 ± 854 of 4 2.04Up
Fat body1301 ± 1334 of 4 1.84Up
Ovary998 ± 74 of 4 1.40Up
Testis708 ± 244 of 4 1.00None
Male accessory glands684 ± 414 of 4 1.00None
Virgin spermatheca333 ± 134 of 4 0.47Down
Mated spermatheca272 ± 134 of 4 0.38Down
Adult carcass1075 ± 254 of 4 1.50Up
Larval CNS866 ± 334 of 4 1.22Up
Larval Salivary gland1223 ± 1244 of 4 1.73Up
Larval midgut1075 ± 1114 of 4 1.52Up
Larval tubule1879 ± 254 of 4 2.70Up
Larval hindgut962 ± 524 of 4 1.36Up
Larval fat body888 ± 634 of 4 1.30None
Larval trachea853 ± 974 of 4 1.20None
Larval carcass1637 ± 1834 of 4 2.31Up
S2 cells (growing)826 ± 224 of 4 1.17Up
Whole fly708 ± 264 of 4

Looking for FBgn0261394. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime