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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261395 through 18771 annotations produced 1 hits



Prosalpha3T (Prosalpha3T):

Annotation Number : CG1736
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261395
Gbrowse : chr3R:26948341-26949103 (-) // 100.0 //
Probeset : 1636270_at
Accessions : protein= NP_651843;, nucleotide= NM_143586;
Pathway : "0000502 // proteasome complex // inferred from electronic annotation /// 0001673 // male germ cell nucleus // inferred
Interpro : alpha-subunit complex // inferred from electronic annotation"
FlyMine data for FBgn0261395.
Homophila reports that CG1736 is a close match (1e-33) to human gene P27K;PROS27;PSMA6 (NP_002782), a gene associated with {Myocardial infarcation, susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0261395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head4 ± 00 of 4 0.30Down
Eye2 ± 10 of 4 0.21Down
Thoracicoabdominal ganglion5 ± 21 of 4 0.40None
Salivary gland13 ± 20 of 4 0.94None
Crop3 ± 10 of 4 0.30Down
Midgut0 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.20Down
Hindgut3 ± 00 of 4 0.30Down
Heart1 ± 00 of 4 0.09Down
Fat body3 ± 50 of 4 0.28Down
Ovary1 ± 00 of 4 0.10Down
Testis231 ± 74 of 416.40Up
Male accessory glands8 ± 10 of 4 0.60None
Virgin spermatheca1 ± 00 of 4 0.12Down
Mated spermatheca3 ± 10 of 4 0.23Down
Adult carcass7 ± 30 of 4 0.50None
Larval CNS2 ± 20 of 4 0.18Down
Larval Salivary gland3 ± 11 of 4 0.27Down
Larval midgut1 ± 00 of 4 0.09Down
Larval tubule7 ± 11 of 4 0.50Down
Larval hindgut1 ± 00 of 4 0.10Down
Larval fat body44 ± 203 of 4 3.20None
Larval trachea2 ± 10 of 4 0.14Down
Larval carcass2 ± 10 of 4 0.20Down
S2 cells (growing)3 ± 11 of 4 0.27Down
Whole fly14 ± 13 of 4

Looking for FBgn0261395. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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