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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261396 through 18771 annotations produced 1 hits



Regulatory particle non-ATPase 3 (Rpn3):

Annotation Number : CG10484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261396
Gbrowse : chr2L:19051829-19053681 (+) // 100.0 //
Probeset : 1628269_at
Accessions : protein= NP_477300;, nucleotide= NM_057952;
Pathway : "0000502 // proteasome complex // inferred from sequence or structural similarity /// 0000502 // proteasome complex // i
Interpro : lid subcomplex // inferred from sequence or structural similarity"
FlyMine data for FBgn0261396.
BioGrid reports that CG10484 interacts with CG14145 CG32491 .
TRiP has 2 RNAi stocks for FBgn0261396 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261396 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain266 74 of 4 0.50Down
Head322 64 of 4 0.60Down
Eye291 64 of 4 0.52Down
Thoracicoabdominal ganglion253 54 of 4 0.50Down
Salivary gland341 194 of 4 0.61Down
Crop493 54 of 4 0.90None
Midgut412 114 of 4 0.70Down
Tubule612 494 of 4 1.10None
Hindgut396 44 of 4 0.70Down
Heart900 394 of 4 1.62Up
Fat body822 674 of 4 1.48Up
Ovary802 64 of 4 1.40Up
Testis327 64 of 4 0.60Down
Male accessory glands433 194 of 4 0.80Down
Virgin spermatheca479 254 of 4 0.86None
Mated spermatheca460 354 of 4 0.83None
Adult carcass642 194 of 4 1.20Up
Larval CNS596 294 of 4 1.07None
Larval Salivary gland862 664 of 4 1.55Up
Larval midgut782 714 of 4 1.41Up
Larval tubule1656 284 of 4 3.00Up
Larval hindgut781 564 of 4 1.40Up
Larval fat body676 544 of 4 1.20None
Larval trachea548 834 of 4 0.99None
Larval carcass1317 1544 of 4 2.37Up
S2 cells (growing)553 74 of 4 1.00None
Whole fly556 214 of 4

Looking for FBgn0261396. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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