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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261403 through 18771 annotations produced 1 hits



chr2R:1194755-1216986 (+) // 100.0 // (lethal (2) NC130):

Annotation Number : CG10392
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626219_s_at
Accessions : protein= , nucleotide= NP_523620; /// NP_724406; /// NP_724407;
Pathway : 0006486 // protein glycosylation // inferred from mutant phenotype /// 0035220 // wing disc development // inferred from
FlyMine data for full length.
BioGrid reports that CG10392 interacts with CG10664 CG11650 Dmel CG34324 CG13043 CG2852 CG6521 CG8697 CG10488 CG10523 CG10685 CG10971 CG11186 CG11350 CG13204 CG13362 CG31175 CG31635 CG32514 CG33141 CG4998 CG5709 CG6416 CG6843 CG8725 CG33197 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain660 ± 144 of 4 2.20Up
Head393 ± 224 of 4 1.30Up
Eye673 ± 134 of 4 2.20Up
Thoracicoabdominal ganglion813 ± 564 of 4 2.70Up
Salivary gland601 ± 204 of 4 1.96Up
Crop537 ± 174 of 4 1.80Up
Midgut329 ± 114 of 4 1.10None
Tubule332 ± 94 of 4 1.10Up
Hindgut377 ± 74 of 4 1.20Up
Heart640 ± 354 of 4 2.09Up
Fat body648 ± 774 of 4 2.12Up
Ovary453 ± 54 of 4 1.50Up
Testis67 ± 24 of 4 0.20Down
Male accessory glands429 ± 84 of 4 1.40Up
Virgin spermatheca586 ± 404 of 4 1.91Up
Mated spermatheca692 ± 74 of 4 2.26Up
Adult carcass430 ± 184 of 4 1.40Up
Larval CNS783 ± 634 of 4 2.55Up
Larval Salivary gland601 ± 164 of 4 1.96Up
Larval midgut415 ± 124 of 4 1.36Up
Larval tubule480 ± 164 of 4 1.60Up
Larval hindgut566 ± 114 of 4 1.85Up
Larval fat body301 ± 224 of 4 1.00None
Larval trachea611 ± 644 of 4 2.00Up
Larval carcass703 ± 154 of 4 2.29Up
S2 cells (growing)701 ± 64 of 4 2.29Up
Whole fly306 ± 204 of 4

Looking for FBgn0261403. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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