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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261434 through 18771 annotations produced 1 hits



chr3R:170727-172372 (-) // 100.0 // ():

Annotation Number : CG9768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638586_at
Accessions : protein= , nucleotide= NP_524221;
Pathway : "0001706 // endoderm formation // traceable author statement /// 0001708 // cell fate specification // traceable author
Interpro : DNA-dependent // non-traceable author statement /// 0007362 // terminal region determination // traceable author statem
FlyMine data for full length.
Homophila reports that CG9768 is a close match (1e-11) to human gene GLIS3;ZNF515 (NP_689842), a gene associated with Diabetes mellitus, neonatal, with congenital hypothyroidism, 610199 (3).
BioGrid reports that CG9768 interacts with CG7383 CG6964 CG17046 CG1389 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 1.10None
Head2 10 of 4 0.50Down
Eye3 00 of 4 0.61None
Thoracicoabdominal ganglion61 24 of 410.60Up
Salivary gland12 30 of 4 2.16None
Crop3 10 of 4 0.70None
Midgut0 00 of 4 0.20Down
Tubule1 00 of 4 0.30Down
Hindgut1 10 of 4 0.30Down
Heart2 00 of 4 0.39Down
Fat body5 30 of 4 0.98None
Ovary1 00 of 4 0.20Down
Testis9 01 of 4 1.60Up
Male accessory glands6 10 of 4 1.20None
Virgin spermatheca7 10 of 4 1.25None
Mated spermatheca6 00 of 4 1.07None
Adult carcass5 20 of 4 1.00None
Larval CNS114 144 of 419.89Up
Larval Salivary gland6 10 of 4 1.07None
Larval midgut1 00 of 4 0.30Down
Larval tubule4 00 of 4 0.80None
Larval hindgut2 10 of 4 0.35None
Larval fat body6 20 of 4 1.10None
Larval trachea3 10 of 4 0.60Down
Larval carcass3 10 of 4 0.55None
S2 cells (growing)2 00 of 4 0.38Down
Whole fly5 00 of 4

Looking for FBgn0261434. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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