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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261437 through 18771 annotations produced 1 hits



():

Annotation Number : CT32724
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261437
Gbrowse : chr2L:8364990-8365811 (+) // 100.0 //
Probeset : 1624894_s_at
Accessions : protein= NP_723378;, nucleotide= NM_164809;
Pathway : engulfment // inferred from mutant phenotype /// 0007052 // mitotic spindle organization // inferred from mutant phenot
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
FlyMine data for FBgn0261437.
TRiP has 1 RNAi stocks for FBgn0261437 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261437 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain227 34 of 4 0.60Down
Head269 134 of 4 0.70Down
Eye383 34 of 4 1.03None
Thoracicoabdominal ganglion249 94 of 4 0.70Down
Salivary gland235 214 of 4 0.63Down
Crop277 164 of 4 0.70Down
Midgut238 194 of 4 0.60Down
Tubule259 154 of 4 0.70Down
Hindgut180 114 of 4 0.50Down
Heart304 74 of 4 0.82Down
Fat body237 644 of 4 0.64Down
Ovary550 74 of 4 1.50Up
Testis134 134 of 4 0.40Down
Male accessory glands257 184 of 4 0.70Down
Virgin spermatheca408 144 of 4 1.09None
Mated spermatheca412 414 of 4 1.10None
Adult carcass184 124 of 4 0.50Down
Larval CNS612 354 of 4 1.64Up
Larval Salivary gland369 204 of 4 0.99None
Larval midgut276 54 of 4 0.74Down
Larval tubule372 54 of 4 1.00None
Larval hindgut271 64 of 4 0.73Down
Larval fat body320 204 of 4 0.90None
Larval trachea486 264 of 4 1.30Up
Larval carcass312 194 of 4 0.84None
S2 cells (growing)310 74 of 4 0.83Down
Whole fly373 184 of 4

Looking for FBgn0261437. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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