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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261439 through 18771 annotations produced 1 hits



():

Annotation Number : CG17246
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261439
Gbrowse : chr2R:15279360-15283453 (-) // 100.0 //
Probeset : 1629086_s_at
Accessions : protein= NP_477210; /// NP_725881; /// NP_725882;, nucleotide= NM_057862; /// NM_166343; /// NM_166344;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : "0008177 // succinate dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0009055 // electron
FlyMine data for FBgn0261439.
Homophila reports that CG17246 is a close match (0) to human gene SDHA;SDH2;SDHF (NP_004159), a gene associated with Leigh syndrome, 256000 (3);Mitochondrial respiratory chain complex II deficiency, 252011 (3).
BioGrid reports that CG17246 interacts with CG31052 CG3647 CG7787 CG9470 .
VDRC has 1 RNAi stocks for FBgn0261439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1253 ± 244 of 4 0.90None
Head1234 ± 394 of 4 0.90None
Eye1269 ± 554 of 4 0.95None
Thoracicoabdominal ganglion1742 ± 444 of 4 1.30Up
Salivary gland2389 ± 484 of 4 1.78Up
Crop1526 ± 454 of 4 1.10None
Midgut1095 ± 54 of 4 0.80Down
Tubule2946 ± 954 of 4 2.20Up
Hindgut2524 ± 544 of 4 1.90Up
Heart1361 ± 784 of 4 1.02None
Fat body989 ± 664 of 4 0.74Down
Ovary626 ± 84 of 4 0.50Down
Testis578 ± 74 of 4 0.40Down
Male accessory glands482 ± 64 of 4 0.40Down
Virgin spermatheca1284 ± 354 of 4 0.96None
Mated spermatheca1282 ± 644 of 4 0.96None
Adult carcass3314 ± 284 of 4 2.50Up
Larval CNS776 ± 434 of 4 0.58Down
Larval Salivary gland773 ± 314 of 4 0.58Down
Larval midgut1775 ± 874 of 4 1.32Up
Larval tubule670 ± 464 of 4 0.50Down
Larval hindgut1606 ± 964 of 4 1.20None
Larval fat body126 ± 304 of 4 0.10Down
Larval trachea729 ± 574 of 4 0.54Down
Larval carcass1794 ± 1564 of 4 1.34None
S2 cells (growing)753 ± 324 of 4 0.56Down
Whole fly1340 ± 744 of 4

Looking for FBgn0261439. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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